Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04142 ATGGAGCATCAAGAATCAAGTGCTGAGAAGTATGAGAAATTTACATTGAAGATTGAGAACTTCTCTCGCTTGGACAAGGCAATTTTATCCGAGCCTTTTGTCTTAGATGGCTTTCCATGGATGATTTACCTGTGTACGGGCGGGAACGTGACATGCGACTACTTGTCAATTTATTTGTATGCTGTACAAACTGCTAATATGGCTGAGGGATGGAGTAGAGATGTGAAACTTAAGTTTCGTGTATTTAGTCGAGTCAATACCAACATGACAATCACGAAAAGATCAACCTACAAGTTCAATGACCGTGTTAATTTCTTCGGTTTTGAATCTTTTATGACTTTAGCCGAGCTTTGCGATCCTAACAAGGGGTTTCTTGTGAAAAATGCTTTCATTGTTGGTGTAGAAGTTTATGTTTGTAAGTCAAGAAATGAGAAACGATTAAATCAAGCAGCTAACATAACTACTTCTCTAAAGCCGGAGCTAGAAAAAGGTCAAGTTCAAATTGTAGGTGAGCTTATGGATTTCAAGGGTTTGGGACATACAGAAAAAGCTTTTGTTCCATTACTAAATCAAGTATGTTCTCTGCACCCTCAACTTATTGAGTTCCAACGGAAAAGAAGTCGCCAGTTTAGGGAATGGGCGTTCACGGCTTTAGGTAGAGTTCTTTATTTCCTCAAGACAAGAAAGGCAAGAGATATGAATGACTTAGCTTGTAAGGATCTTCAAATTTTGTGGGAAGAACTTGAGCcatttggttttgatttgagaTGGCTAGAACCGCATGTTAAGTCAGCTTTAGGATTGAAAAGTTATTTGGAGAAATTGAAGGAGGCAGAAAAGATAAAGGATAATGTTGTAGCTTTAGAGTTGGAAATGCTGAGGGTCAAGGCAAATCTTGATTCTGCCAAATACTTGTTGGAGGCACAAGACTTCCAAGAGATAGATTTGGATTATGAACTTGGATttgtatga 972 0.3755 MEHQESSAEKYEKFTLKIENFSRLDKAILSEPFVLDGFPWMIYLCTGGNVTCDYLSIYLYAVQTANMAEGWSRDVKLKFRVFSRVNTNMTITKRSTYKFNDRVNFFGFESFMTLAELCDPNKGFLVKNAFIVGVEVYVCKSRNEKRLNQAANITTSLKPELEKGQVQIVGELMDFKGLGHTEKAFVPLLNQVCSLHPQLIEFQRKRSRQFREWAFTALGRVLYFLKTRKARDMNDLACKDLQILWEELEPFGFDLRWLEPHVKSALGLKSYLEKLKEAEKIKDNVVALELEMLRVKANLDSAKYLLEAQDFQEIDLDYELGFV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04142 323 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 307 - -
Tsu07g04142 323 Pfam MATH domain 18 137 IPR002083 GO:0005515
Tsu07g04142 323 Coils Coil 268 298 - -
Tsu07g04142 323 SMART math_3 13 117 IPR002083 GO:0005515
Tsu07g04142 323 CDD MATH 13 136 IPR002083 GO:0005515
Tsu07g04142 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 152 IPR008974 GO:0005515
Tsu07g04142 323 SUPERFAMILY TRAF domain-like 13 141 - -
Tsu07g04142 323 ProSiteProfiles MATH/TRAF domain profile. 11 136 IPR002083 GO:0005515
Tsu07g04142 323 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04142 Tsu-Chr7 47208067 47209236 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04142 - - cam:101489930 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02030 01 20780440 20784244 Tsu07g04142 07 47208067 47209236 PCT