Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03979 ATGGAGTTTGGTGAAACAGAGAAAAAAGAGCTTAATTCAAAGATTCCATGGATACCCACCACACCATTTAAGCCAATTGCTCAGAGACCAGTGCCGATCTGCAATTCTGGAGAGAGAAATCAGCTGAATTCTCATTTCAATGGAGAATTTTCATGTGTTGAATCTTCAAGCGGTGGAGATGTTAACAACCAGTCAGAAACTGTTGCTGTAGCATCAGACATTGGTCATGACAATGCCAGAACTAGGGTACAAATATCCTTTGATGATAATGTTCCTAGTTCAACTAATAGTTTTGCTCAACTTTTGGCTCAGGCAGAGGCGCCTCCGTCATCGTCGTCGTATTCAAATGCAGCATATGAATTTTCAGGGAACCAATTTGTTCCTGGTGTGTGGAACTCACAGTTCAACCAAAGTTATGCATTTTTATATCAGCAACAACCCTTCCTCAATTTAATTCATAACAGTTACCAAGATCCTCAGGGTACACCATACTTGGGTTATTATGACAAGACCAATTCCCAGGTTGCTCTGCCTCcagaaaataacataacatcaaAAGACAAACAAGTTGTGGAGACACAAATATGCATGGATCAAAGGGAAGACGAGAATAATGCATCGGCTACAATGTGCAACAATTCACACAACAAACTCTCTGATCCTGTTGTAGACTTGACTGCTGTTTCTACACCATGCAAGGAGAATAACCACAATAAGGAAATACACCATGCTATTGATCTTAATGAAATACCCCAAACAAAACCGAAAAGAAGAAAGCATCGCCCCAAGGTCATAAAAGAAGGCAAACCGAAAAGAACTCCAAAGCCAGCCACTCCAAAGCCTGATCAATCAAAAGAAACCTCAACTCAAAAGAGGAAGTATGTGAGAAAGAAAGAGTCAAACACAACTCCAGCAGAAGTGACAGGGGAATGCACTGAACCATTGATGACAGAGTCTGCCAAAAAGACATGTAGAAGGTCCTTATTCTTTGACATACCAGAACAACCAAGAGATGGAAATTCTGCATCCAGAGAAGAAAACGCAACTACACGTTTTGGTGGAGAAATTGGTATAGAGGTCCAGGAAACACATGCTTTACAAGAAGATGCACAAGCCTCCAGCAGTAACGGAAAACTTCCGAATACAGGATCACAAGAAGTTCGTTCCAAGAGAAAACCATCTGGTACCGCTGAACAAGCAGACAGCAGCAGCATTAATATGATCGGGGCACAATATAATTTAATGCAGGCATACCAGTCCAAGTATTGGGCTCAATTTCCAAATAtccagaagaaaaaaagaagtgaaaaaGGGAAATTTTCAAACACATCCAATACATCTACCATAGCTGCTATCAAAGATGTACAACTTGCAAGATGCTCTGACGAAAATGCAAGATCACATCCGGATGCATCAACTTCTAATGGCTGGACTACTGCTTCTGCTTCTGAATATGAAACAGCGAGACTCCTAACCATGCTAGCTACAGAAACAGCTCCCTATGACAAATCTCAATCGCTGGAGTACAATTTATTTTCAGGACAAAGCAGACCAACCAAAAAAAGATCCAGAGTCACTACAAGAATTCAAGATTGCACTTCACTGACCATAATTAGAAACTGTGATGCTAAACTGACTAATATTGCAAGCCTAGGCAGCTCTGATAGACAGACATTTGAGAATGCAGAAAGACCACAAACAGGCATTGATGCTCTAGTTGCAGAGATGTGTGCATCACTCACAAAAAAGAAACGGAGTAAAAAGAGAAGTGTGTCAATTAGTTCTACATATTCTCGCATAAATGAAATGCAACAACATTTGCCCTTGCAGAACTCGTTAGGTGTTGCTTGCGGAGAGAGTTGGAAAAGTGTACCTACTGTGGACGCATTAACACAGCAATTTAGACACCTAAACATATATAGAGAAGCTAGAGAGCTGGTGTTGTGTGAACAGAATGCACTTGTCCCTTACAATCggaaaaatgaaaaacacaaaGGCCAGGTTCATAAATATGGCACCATCATTCCCTTTGAGGGTGTGTTTGATCCCATCAAGAAACAGCGCCCACGACCTAAAGTTGATCTTGATGAGGAAACTAATAAAGTGTGGAAGCTTCTGATGTTGGATATAAACAGTCATGGGGTTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAAATGAACGAAATGTTTTCCGAGGAAGAGCAGAGTCATTTATTGCACGGATGCATCTTGTTCAAGGAGACAGACGTTTTTCTCGATGGAAAGGATCGGTGGTGGATTCGGTGGTTGGAGTTTTTCTCACTCAAAATGTCTCAGATCATCTTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATTTCCACTGAAGTCAAGCAGCAACTTCGATACATGCCATGAGGAAAGTGCAAGCATGATTGTCAACACACCAGAGGTGCAGATTGTGGAACCAGAAGAAAATGCAAAGCTGGAAGACATAATATTGAATCAATCTGTTCATGAATTGAGTTCTATGACAAAAGATATCATTGAACATTCTGAAGAAAGAGAAACTGTTGACAGCAACAGTATTGACTCCTGTGGAACTACTGGCAGCTTAAATAGCTTAAAAGATGAATCAAATTGTAAACCGTCAGAACCAGCTCAAAGCAATGTTAGGGAACATAGTACAATGGAATTTGTTAATCAAGCTACTGGGGAAGGACAACAAAATTCATGTCACGGAGGTGTTAGGAAAGAGTTAAATGCTTTATTTTCATCCCATTGCTCCATTGTTACATCTCAATCGTCTGGAGGTTTTTCAATTGATCAAAATCCTGAGAAGATAGGATCATTCTCAGACAGCAATGCAGAAGTAGAAGATCAGCTAAGCACAGCCGAATACAATTTTTCCAACAGTACTTCTTTCAGTAAGCTTTTAGGAATGGCAAGTTCGACCCAGGTACATGAAGTTAACAGTCAGAGAAGCAATCCAACTGAGAATTTGAGAGATTCATACGGTCAATCTGCAACTATGATGCATGACAACCTGGAACAGAACTTGGAAAAATCAAATGTTACTCAAAGCTCCTTAGAAGCAATCGTGGCACAATGCAATGACTATAGTCTGAAAATGACCCCCAACTCTGGAGTCCTAGAACTCAACTGCTATAATCCTGTCAATTTTGAAGCCTCGTCCAGTGGCTCCTCAATGAATAACATAAGCTCGAGTTCTCCAGCAGAGTCTCACAGCATGCTATCCCAAGTCCATCTTCAGCAACAGAGTGATCACAAGCAGCACAAGGCTCTCCACATTTCTGGACAAAGTCAAGATCTTATGCAGAAATCAAGGGAATCAGATTCTGGTGACCACAATTATGCTATGACGAACGAAAACAGTAATTTAGATTCTGTCCCTGTAAAATCAAAAGGCAAGGAGCGCGGGAAAGAGAAAAAGGATAGCTTCAATTGGGATAGTTTAAGAATACAGGCACAAGCTAAGGCAGGGAAGAGAGAAAAGACAGAAAGCACCATGGACTCTTTGGATTGGGATGCTGTGAGACGTGCAAACGTCAATGAAATTGCTGATGCCATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTCAGAGTTTCCTGAATCTACTTGTTGAAAAACACGGGGCTATTGATCTCGAGTGGCTGAGAGATGTTCCACCTGACCAGGCAAAAGAATTCTTGCTCAGCATAAGGGGATTGGGATTGAAAAGTGTTGAGTGCGTGCGACTATTAACACTGCACCATCTTGCTTTCCCGGTGGACACAAATGTTGGGCGTATTGCGGTGCGATTGGGATGGGTACCTCTCCAGCCATTGCCCGAGTCACTACAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAATCCATACAAAAATATCTCTGGCCCCGACTGTGCAAGCTTGACCAAAAAACATTGTACGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGTCCAATGAGAGGGGAATGCAGACACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTTGCCCTCCCAGGACCAGAGCAGAAGAATATAGTTGTCTCAGGTGGAAACAATGCAACTGATCAGAACCCATCAGTAATCATCGATCAGTTGCCCCTGCCTCTCCCAGGACCGGAGCAGAAGAATATTGATATTACAACTGGAAACAATGCAACTGATCAGAACCAAACAGTAATCATCAATCAATTGCCCTTGTCTATCACTGAAAACACAAACCAAGCAGAAGAACATCAACAGTCAGTAGTGATCAGGCAACTTGAAACGAACTCTGAAATCGATATTTGCCAACCCATTATTGAAGAGCCAGCAACTCCAGAACCAGAATGCTCTGAAGTATTTGAAAATGATATAGAGGATATTTTCTATGAGGAATCAGATGAAATTCCAACCATCAAACTAGACATAGAAGAGTTCACTACGAATTTACAAAACTATATGCAAGAAAACATGGAACTTCAAGAAGGTGAAGTGTCAAAGGCCTTGGTTGCTCTAAATCAAGAAGCTGCTTACATTCCTACACCGAAGCTAAAGAACGTCAGCCGGTTGCGCACAGAGCATTCTGTTTATGAACTCCCAGATACACATCGTCTTCTGGAAGGGTGGGAAAAGCGAGAACCTGACGATCCGGGCAAATACCTTCTAGCTATCTGGACTCCAGGTGAGACAGCAAATTCTATTCAACCACCGGAAGGAAAATGCAGCGCTCAGGAACATGGCCAGCTCTGTAATGAGGAGGAATGTTTTTCATGCAATAATTTCCGTGAAGCTAATTCACAAATAGTTCGAGGGACAATCCTGATACCATGTCGAACGGCTATGAGAGGGAGCTTTCCGCTAAACGGCACCTATTTTCAAGTCAATGAGGTTTTCGCAGACCATGAATCAAGTCTTAACCCGATTAGCGTTCCCAGAAGTTGGATATGGAACCTCAATAGGAGAACAGTGCATTTTGGAACCTCCATACCAACCATATTCAAAGGTCTAACAACACCAGAAATTCAACAGTGCTTCTGGAGAGGGTTTGTCTGTGTACGAGGATTTGACAGGCAAACACGAGCACCCCGTCCTTTGAAAGCTAGACTACATTTCCCAGCTAGCAAATTGGCCAAGACAAAGGAGAAGACAAAAAAAGACTCCACGGCCACAAACTCACAACAAGGATTGAATTCAAAACAAAATGCAGACCAGCCAGAATTTCTTGCTAGCATTCCCAACTTACAACAGAACGGCGGATCCTGA 5313 0.4165 MEFGETEKKELNSKIPWIPTTPFKPIAQRPVPICNSGERNQLNSHFNGEFSCVESSSGGDVNNQSETVAVASDIGHDNARTRVQISFDDNVPSSTNSFAQLLAQAEAPPSSSSYSNAAYEFSGNQFVPGVWNSQFNQSYAFLYQQQPFLNLIHNSYQDPQGTPYLGYYDKTNSQVALPPENNITSKDKQVVETQICMDQREDENNASATMCNNSHNKLSDPVVDLTAVSTPCKENNHNKEIHHAIDLNEIPQTKPKRRKHRPKVIKEGKPKRTPKPATPKPDQSKETSTQKRKYVRKKESNTTPAEVTGECTEPLMTESAKKTCRRSLFFDIPEQPRDGNSASREENATTRFGGEIGIEVQETHALQEDAQASSSNGKLPNTGSQEVRSKRKPSGTAEQADSSSINMIGAQYNLMQAYQSKYWAQFPNIQKKKRSEKGKFSNTSNTSTIAAIKDVQLARCSDENARSHPDASTSNGWTTASASEYETARLLTMLATETAPYDKSQSLEYNLFSGQSRPTKKRSRVTTRIQDCTSLTIIRNCDAKLTNIASLGSSDRQTFENAERPQTGIDALVAEMCASLTKKKRSKKRSVSISSTYSRINEMQQHLPLQNSLGVACGESWKSVPTVDALTQQFRHLNIYREARELVLCEQNALVPYNRKNEKHKGQVHKYGTIIPFEGVFDPIKKQRPRPKVDLDEETNKVWKLLMLDINSHGVDGTDEDKAKWWENERNVFRGRAESFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAARFPLKSSSNFDTCHEESASMIVNTPEVQIVEPEENAKLEDIILNQSVHELSSMTKDIIEHSEERETVDSNSIDSCGTTGSLNSLKDESNCKPSEPAQSNVREHSTMEFVNQATGEGQQNSCHGGVRKELNALFSSHCSIVTSQSSGGFSIDQNPEKIGSFSDSNAEVEDQLSTAEYNFSNSTSFSKLLGMASSTQVHEVNSQRSNPTENLRDSYGQSATMMHDNLEQNLEKSNVTQSSLEAIVAQCNDYSLKMTPNSGVLELNCYNPVNFEASSSGSSMNNISSSSPAESHSMLSQVHLQQQSDHKQHKALHISGQSQDLMQKSRESDSGDHNYAMTNENSNLDSVPVKSKGKERGKEKKDSFNWDSLRIQAQAKAGKREKTESTMDSLDWDAVRRANVNEIADAIKERGMNNMLAERIQSFLNLLVEKHGAIDLEWLRDVPPDQAKEFLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQKTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKNIVVSGGNNATDQNPSVIIDQLPLPLPGPEQKNIDITTGNNATDQNQTVIINQLPLSITENTNQAEEHQQSVVIRQLETNSEIDICQPIIEEPATPEPECSEVFENDIEDIFYEESDEIPTIKLDIEEFTTNLQNYMQENMELQEGEVSKALVALNQEAAYIPTPKLKNVSRLRTEHSVYELPDTHRLLEGWEKREPDDPGKYLLAIWTPGETANSIQPPEGKCSAQEHGQLCNEEECFSCNNFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPISVPRSWIWNLNRRTVHFGTSIPTIFKGLTTPEIQQCFWRGFVCVRGFDRQTRAPRPLKARLHFPASKLAKTKEKTKKDSTATNSQQGLNSKQNADQPEFLASIPNLQQNGGS 1770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03979 1770 Coils Coil 1493 1513 - -
Tsu07g03979 1770 Gene3D Hypothetical protein; domain 2 1155 1251 - -
Tsu07g03979 1770 CDD ENDO3c 1177 1295 IPR003265 GO:0006284
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 1722 1770 - -
Tsu07g03979 1770 SUPERFAMILY DNA-glycosylase 735 1352 IPR011257 GO:0003824|GO:0006281
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 1135 1152 - -
Tsu07g03979 1770 SMART ccc3 1330 1350 IPR003651 GO:0051539
Tsu07g03979 1770 PANTHER ROS1, PUTATIVE-RELATED 1391 1736 - -
Tsu07g03979 1770 Gene3D - 1252 1368 IPR023170 -
Tsu07g03979 1770 PANTHER ROS1, PUTATIVE-RELATED 1108 1394 - -
Tsu07g03979 1770 PANTHER ROS1, PUTATIVE-RELATED 367 1091 - -
Tsu07g03979 1770 PANTHER ROS1, PUTATIVE-RELATED 283 348 - -
Tsu07g03979 1770 PANTHER ROS1, PUTATIVE-RELATED 1 283 - -
Tsu07g03979 1770 SMART endo3end 1157 1329 IPR003265 GO:0006284
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 1060 1088 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 368 402 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 857 890 - -
Tsu07g03979 1770 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 367 1091 IPR044811 GO:0019104|GO:0035514|GO:0080111
Tsu07g03979 1770 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1391 1736 IPR044811 GO:0019104|GO:0035514|GO:0080111
Tsu07g03979 1770 Pfam Permuted single zf-CXXC unit 1587 1618 IPR028924 -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 269 300 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 849 890 - -
Tsu07g03979 1770 Pfam RRM in Demeter 1621 1721 IPR028925 -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 254 268 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 236 253 - -
Tsu07g03979 1770 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1108 1394 IPR044811 GO:0019104|GO:0035514|GO:0080111
Tsu07g03979 1770 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1 283 IPR044811 GO:0019104|GO:0035514|GO:0080111
Tsu07g03979 1770 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 283 348 IPR044811 GO:0019104|GO:0035514|GO:0080111
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 236 319 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 1738 1770 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 1120 1134 - -
Tsu07g03979 1770 MobiDBLite consensus disorder prediction 1060 1155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03979 Tsu-Chr7 45851715 45861932 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03979 - - mtr:MTR_7g103680 2763.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03979 07 45851715 45861932 Tsu07g03979 07 45851715 45861932 ECH
Tsu07g03979 07 45851715 45861932 Tsu01g02265 01 23946551 23948510 PCT