LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g02265	ATGCTCAAGTGCATCCTTATGCATCAATCTACAACTCCTGGATGTATGGTTCTGGAAATAATACAGCTGGTGACAGGAGAAATCGCTGAAAAAACACCTGAAGCTGCCAAAGTGTCATGTCAAAGATCCTTAAATTTCGACATTGGAACAAAAGACGAGAGCTCTGAAAATACAACTGTACTCCTTGGAAAAGAAAATGGTGTAGCCGAACAAGAAACCAATTTTGGCATTACTTGTGGTTTAAGCACTTCAGTTAATGTTAAGCATACATCAAACAGTTCGATGTCATTACCAGAAGATACACAGGCCCCAGATACATCTTCACAAAGCTCCCACCCTGAGACAAAGCCAAAAGAAAACCCAACTGGCAAGAAAAAATATGTAAGAAGGAAATTGAACAAGACTTCGGCTCCTCCAGCAGAAATTACAGGTGAATTGACTACAGAAAAGATGCCTGAATTGGCCAAACCTCCCTGTAAAAGTTACACAAATTTTGACAATGGAGGAATGGAAGAGAGTTCCGCTGTCAAAGAAAATGCAACTACACATCTGAGCGAAGAAAATGTAGTCACCGAGGGAACAAATCCAGATCTTGCGTATGATGCAAAAACTTCCATGAAGCAGGTATCAGACAATAATGTGTCATTAACAGAAGATACGCAAACCACAAATACATCGTCAAAAAGAAAGTCCCATAGGACAAAGCCAAAAGAAGGCCCAATTACCAAAAGGCAGTATATGAGAAGGTCAAGGTTGAACAAGTCTTCCACTCCTACAGAAGTATCCCGAGACTTGCCTGAAAAAATGATGCCAGAATCTGCCAAAACTTCTTGTCAGAAGTCCTTAAATTTTGACGGAGGAGCAAGAGATGAAAGTTCTGCCGACAGAGAAAATGCAAGTGTGCATCCGTGCAAAGAAACTGGTGCAGCAATGCAGGAAATTGAGGTAGGCTATGATATGGAGACTTTCATGAAGCAGAAAGTAGAAAATAATTGCCTGTCATTCTGTAATAATAAACAAACCCCAACTGTGCGTCCACGCGAAGAAACTGGTGCAGTAATGCAGGAAATTGATGTAAGCCTTGACTATGATATGGAGACTTTCATCAAGCCAGCAGCAGAAAATAATTACATGTCAGTTAGTAAAAATGAACAATTGCCAAGTACATCTCCTTCAAAAACTAATCCCCCAGGGGATAAGCCAAAAGAAACCCCAAATGGCAAGAGGAAGTGTGTGAAAAAGAAGAGATCGAAGAGGACTTCTACTCCAAGAGAAATGACAGGTGAATTGACTGAACCAATTATGTCTGAACCTACGatTAAAATTCTACATTTGGAAAATTCACACATGGTTGGGTTTAAGAGGCAAAGAAAAGAATATGCCGAGTTTTCTCATAATGGTTTGAAATATTTAGAGTTACGTGGTTGTGTTTGCTCCACAAATGTAATTGAGATCACTAGTTGCCTATTAAGGAATGCAAGTTCACTTAAGCAAATTACTTTCAGTTCTGTTGACAAATTCTATATTGGTGCTAGTAGATGGACTAATAGGTCTGATggttgttgttggtttgaaCGGAATCTTATTCATGAGAAGCTTAAAGATGAAGTACCTGAACAGTGTCAGCTTATAATTTTCTAG	1641	0.3888	MLKCILMHQSTTPGCMVLEIIQLVTGEIAEKTPEAAKVSCQRSLNFDIGTKDESSENTTVLLGKENGVAEQETNFGITCGLSTSVNVKHTSNSSMSLPEDTQAPDTSSQSSHPETKPKENPTGKKKYVRRKLNKTSAPPAEITGELTTEKMPELAKPPCKSYTNFDNGGMEESSAVKENATTHLSEENVVTEGTNPDLAYDAKTSMKQVSDNNVSLTEDTQTTNTSSKRKSHRTKPKEGPITKRQYMRRSRLNKSSTPTEVSRDLPEKMMPESAKTSCQKSLNFDGGARDESSADRENASVHPCKETGAAMQEIEVGYDMETFMKQKVENNCLSFCNNKQTPTVRPREETGAVMQEIDVSLDYDMETFIKPAAENNYMSVSKNEQLPSTSPSKTNPPGDKPKETPNGKRKCVKKKRSKRTSTPREMTGELTEPIMSEPTIKILHLENSHMVGFKRQRKEYAEFSHNGLKYLELRGCVCSTNVIEITSCLLRNASSLKQITFSSVDKFYIGASRWTNRSDGCCWFERNLIHEKLKDEVPEQCQLIIF	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g02265	546	MobiDBLite	consensus disorder prediction	166	192	-	-
	Tsu01g02265	546	PANTHER	TRANSCRIPTIONAL ACTIVATOR DEMETER	227	466	IPR044811	GO:0019104\|GO:0035514\|GO:0080111
	Tsu01g02265	546	PANTHER	TRANSCRIPTIONAL ACTIVATOR DEMETER	109	225	IPR044811	GO:0019104\|GO:0035514\|GO:0080111
	Tsu01g02265	546	MobiDBLite	consensus disorder prediction	376	399	-	-
	Tsu01g02265	546	MobiDBLite	consensus disorder prediction	89	116	-	-
	Tsu01g02265	546	MobiDBLite	consensus disorder prediction	205	224	-	-
	Tsu01g02265	546	PANTHER	TRANSCRIPTIONAL ACTIVATOR DEMETER	28	105	IPR044811	GO:0019104\|GO:0035514\|GO:0080111
	Tsu01g02265	546	MobiDBLite	consensus disorder prediction	376	433	-	-
	Tsu01g02265	546	MobiDBLite	consensus disorder prediction	89	302	-	-
	Tsu01g02265	546	PANTHER	OF SILENCING PROTEIN, PUTATIVE-RELATED	109	225	-	-
	Tsu01g02265	546	PANTHER	OF SILENCING PROTEIN, PUTATIVE-RELATED	227	466	-	-
	Tsu01g02265	546	PANTHER	OF SILENCING PROTEIN, PUTATIVE-RELATED	28	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g02265	Tsu-Chr1	23946551	23948510	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g02265	-		-	mtr:MTR_1g061220	482.641

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g02265	01	23946551	23948510	Tsu01g02265	01	23946551	23948510	ECH
	Tsu07g03979	07	45851715	45861932	Tsu01g02265	01	23946551	23948510	PCT