Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03950 atgcgaGGAGGAGGTTCTGTTTTGGTAATCTTCGCCGCAATGGCGGTTACGCTCGTATACGGTGGTTTTCCTGGGAattatcttcttcttcaccgCTCCATCCCTCTTAACCACAAACTTCAACTCACCACTCTCAAAGCTCGCGACACAGCTCGTCACGCTCGAATCTTGCAAGCTACTGATCCCGGCGGCATTCTTGACTTCTCAGTCCAAggaacctccgatccttattTAGTTGGGTTGTATTTTACCAAAGTCAAGTTAGGGTCTCCTGCTAAAGAATTTTACGTTCAGATTGATACTGGAAGTGATATCTTGTGGCTTAATTGCAATACTTGCAATAATTGCCCTCAATCTAGTGGCCTTGGGATTGAACTCAATTTCTTTGATACGGCTAGTTCGTCCACTGCTGGATTGGTTTCCTGCTCGGACCCAGTTTGTTCTTATGCGGTTCAAACTGCAACAAGTCAGTGCTCTTCTCAGGTTAATCAATGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACATCCGGTTATTATGTTTATGATGCTATGTATTTTGACGTGATCATGGGACAGTCTGTGTATTCTAACTCTTCAGCTACCGTTGTTTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACGGAAAAGGCGGTTGATGGAATTTTTGGGTTTGGCCCCGGTGCTTTATCGGTTATATCACAACTGTCATCACAAGGCATGACGCCCAAAGTGTTCTCTCATTGCTTAAAGGGAGAGGGCAATGGAGGAGGCTTACTGGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATACTCCACTTGTCCCATTACAGCCTCATTACAACTTAAATCTTCAAAGCATTGCTGTTAATGGACAACTTCTCACAATCGATCAAGATGTATTTGCAACGGGTAACAATCGAGGAACTATAGTTGATTCTGGTACTACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTCTCAATGCTATAACTACCACTGTGTCACAGTTTTCCAAACCGATTATTTCCAAAGGAAACCAGTGTTATCTAGTCGCAACCAGCCTAGGTGATATATTTCCTCAAGTCAGTTTAAATTTCATGGGTGGAGCATCCATGGTTTTAAAACCAGAACAGTATCTAATACATTATGGTTTCCTGGATGGTGCTGCGATGTGGTGCATTGGTTTCCAAAAGGTGCAGAAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATTTTTGTATACGACTTAGCGAATCAACGAATTGGGTGGACTGACTATGATTGTTCATCGGCTGTAAATGTCTCTGTGGCTACGACCAAGAGTAAGGACGCATACATAAGTGCAGGACAGATGAGTGTCAGCTCCTCACCCATAGACATTCTCTCCAAGTTTCTACATGTAAGCATTGTTGCTTTTCTTGTGCATATAACAGTCTTCATGGAGCCCCAGTTTTTGTAG 1494 0.417 MRGGGSVLVIFAAMAVTLVYGGFPGNYLLLHRSIPLNHKLQLTTLKARDTARHARILQATDPGGILDFSVQGTSDPYLVGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCNTCNNCPQSSGLGIELNFFDTASSSTAGLVSCSDPVCSYAVQTATSQCSSQVNQCSYTFQYGDGSGTSGYYVYDAMYFDVIMGQSVYSNSSATVVFGCSTYQSGDLARTEKAVDGIFGFGPGALSVISQLSSQGMTPKVFSHCLKGEGNGGGLLVLGEILEPNIVYTPLVPLQPHYNLNLQSIAVNGQLLTIDQDVFATGNNRGTIVDSGTTLAYLVQEAYDPFLNAITTTVSQFSKPIISKGNQCYLVATSLGDIFPQVSLNFMGGASMVLKPEQYLIHYGFLDGAAMWCIGFQKVQKGFTILGDLVLKDKIFVYDLANQRIGWTDYDCSSAVNVSVATTKSKDAYISAGQMSVSSSPIDILSKFLHVSIVAFLVHITVFMEPQFL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03950 497 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Tsu07g03950 497 SUPERFAMILY Acid proteases 77 444 IPR021109 -
Tsu07g03950 497 Gene3D Acid Proteases 66 268 IPR021109 -
Tsu07g03950 497 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 459 - -
Tsu07g03950 497 PANTHER ASPARTYL PROTEASES 7 459 IPR001461 GO:0004190|GO:0006508
Tsu07g03950 497 Gene3D Acid Proteases 269 447 IPR021109 -
Tsu07g03950 497 Pfam Xylanase inhibitor N-terminal 82 267 IPR032861 -
Tsu07g03950 497 CDD pepsin_A_like_plant 82 440 IPR034161 -
Tsu07g03950 497 ProSiteProfiles Peptidase family A1 domain profile. 82 436 IPR033121 -
Tsu07g03950 497 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Tsu07g03950 497 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Tsu07g03950 497 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03950 Tsu-Chr7 45585660 45590173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03950 77 442 Miscellaneous Gene Families AT1G44130 28.021 2.09e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03950 - - gmx:100804147 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03950 07 45585660 45590173 Tsu07g03950 07 45585660 45590173 ECH
Tsu07g03950 07 45585660 45590173 Tsu01g02308 01 24555325 24560333 PCT