Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02308 ATGCGACGGTTTCACACTCCAACGCTGCTGCTGCTTCTATTGATAGTATGCTACATATCCTTCTCGCCGGTCTACGGCGGCGGTGGCGGCGGTTACCTCCATCTACAACGAGCAGTTCCTCTTAACCACCGTGTTGAGATGGACACAATCAGAGCTCGTGATAGAGTTCGCCATGCTCGATTCTTGCAAGGTGTTGTTGCTGGTGTTGTCCGCTTCAATCTTCAAGGCACCTCCGATCCATACTCCCTTGGGCTGTATACTACGAAAGTAAAGATAGGATCTCCACCCAAGGAATTTAATGTACAAATTGACACAGGAAGTGATATTTTGTGGGTTAATTGCAATACTTGCAGTAATTGTCCTCAATCTAGTGGACTTGGGATTGAGCTCAATTTCTTTGACACAGTTGGTTCGTCCACGGCTGCGCTGGTTCCTTGCTCACACCCTATATGCACTTATGGGGGTCAAGGTCCAGCTGCTCAATGCTCCCCTCAGGTTAATCAGTGCAGCTACACCTTTCAGTATGAAGATGGGAGTGGTACCTCGGGTAATTATGTCTCTGATGAACTATATTTTGACATGATTCTCGGACAGTCTGCTCCTGATGTCAACTCTTCAGCTACCATCATTTTTGGGTGTAGCACCTCTCAGTCTGGAGATTTGACTAAGACGGACAGAGCGGTTGATGGAATTTTTGGGTTCGGCCCTGGTGCTCTATCTGTTGTATCACAATTGTCTTCACGAGGAATAACACCCAAAGTTTTCTCTCATTGTTTGAAAGGAGATGCCAATGGAGGTGGGATTTTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTAGTCCCATCACAACCTCATTACAACTTAAATCTTGAGAGCATTGCTGTCAATGGGCAACTTCTCTCAATTAATCCAGCTGTATTTGCAACATCTGACAACCGAGGAACTATAGTTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTTAATGCAGTTAATACTGCTGTGTCACAAATTGCTACTCCCTTTATTTCAAAAGGAAACCAGTGTTATCTGGTCTTAACCAGTATAGATGATAATTTTCCTCCAGTCAGTTTAAACTTTGCGGGTGGAGCATCAATGGATTTAAAACCAGCACAATACCTTGTACATAACGGTTTCCAGGACGGTGCTGCAATGTGGTGCATAGGTTTCCAGAAAGTGCAAGAGGGAGTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATCGTTGTCTATGACTTGGCTCGTCAGCGAATAGGATGGACAAACTATGATTGTTCCATGTCTGTAAACGTCTCAGTGACTACAAGCAAGGATGAGTACATCAATGCAAGAGCAAGACAGACTAGTAACAGCAGCTCAAAGATAGGGATTCTCTCCAAGTTACTCCCTGTAAGCATTGTGGCTCTTTCTATACACATAATAATCTTCATGAAGTCACcacatttataa 1509 0.4341 MRRFHTPTLLLLLLIVCYISFSPVYGGGGGGYLHLQRAVPLNHRVEMDTIRARDRVRHARFLQGVVAGVVRFNLQGTSDPYSLGLYTTKVKIGSPPKEFNVQIDTGSDILWVNCNTCSNCPQSSGLGIELNFFDTVGSSTAALVPCSHPICTYGGQGPAAQCSPQVNQCSYTFQYEDGSGTSGNYVSDELYFDMILGQSAPDVNSSATIIFGCSTSQSGDLTKTDRAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDANGGGILVLGEILEPSIVYSPLVPSQPHYNLNLESIAVNGQLLSINPAVFATSDNRGTIVDCGTTLAYLVQEAYDPLVNAVNTAVSQIATPFISKGNQCYLVLTSIDDNFPPVSLNFAGGASMDLKPAQYLVHNGFQDGAAMWCIGFQKVQEGVTILGDLVLKDKIVVYDLARQRIGWTNYDCSMSVNVSVTTSKDEYINARARQTSNSSSKIGILSKLLPVSIVALSIHIIIFMKSPHL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02308 502 PANTHER ASPARTYL PROTEASES 9 464 IPR001461 GO:0004190|GO:0006508
Tsu01g02308 502 ProSiteProfiles Peptidase family A1 domain profile. 86 441 IPR033121 -
Tsu01g02308 502 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 464 - -
Tsu01g02308 502 Pfam Xylanase inhibitor N-terminal 86 272 IPR032861 -
Tsu01g02308 502 SUPERFAMILY Acid proteases 81 449 IPR021109 -
Tsu01g02308 502 Gene3D Acid Proteases 274 452 IPR021109 -
Tsu01g02308 502 Gene3D Acid Proteases 70 273 IPR021109 -
Tsu01g02308 502 Pfam Xylanase inhibitor C-terminal 290 441 IPR032799 -
Tsu01g02308 502 CDD pepsin_A_like_plant 86 445 IPR034161 -
Tsu01g02308 502 PRINTS Pepsin (A1) aspartic protease family signature 417 432 IPR001461 GO:0004190|GO:0006508
Tsu01g02308 502 PRINTS Pepsin (A1) aspartic protease family signature 320 331 IPR001461 GO:0004190|GO:0006508
Tsu01g02308 502 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02308 Tsu-Chr1 24555325 24560333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02308 70 446 Miscellaneous Gene Families AT1G44130 27.551 7.28e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02308 - - gmx:100820394 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02308 01 24555325 24560333 Tsu01g02308 01 24555325 24560333 ECH
Tsu07g03950 07 45585660 45590173 Tsu01g02308 01 24555325 24560333 PCT