Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03888 ATGTTTTCTCCCTCTGCTCCATTCCCTTCAACAATTCTTCCTTCCTCTTCAGGTATGATGCCTCGTGAGCAAGCTGTTTATGCAGTTTCTTATCCGTCTTCTAGTTTTGCTGCTCATTTTCCTACCTCGGTTCTTTTACAAGAGCATCGCGATGAGTATACGCCTTTACTTCATACGTATAAAGAAGACAAAACATCCCAGGCAACCTTAAATACAAGGGTAATGGATGTGGCCTCAGTCTGTGAGAAAAACAGCACTCGAGATGTTGATGAGTCGGCACATAAGTTGCATCTTCGGTGCCATTTACAGAACCTATTGGCTTATTCGCCGGAAGGggattttgtttcttcttcttcttcttcttcttcaactatGCAACCTGCTGATGATTTCCAATTGGATGCACTTACTCTTGCTAAGCAAGCATTATCAGCCTCAATACAAGCCGCTGAAGCAGCTGAAGAGttgaaattgattaaagttgTTGATGATGACGATAATTCACTGCCTCTTGGTCTGGACGTCTCATCAGTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGGCAGTCTAAACAGAGAAAAGTGTCAAAGTCAAAAGTTTTTGATGAAAGCAAGTACATCACCAGAAAGTCCAATGTACAAAGAAGGTTACGTGTAGagaaaaagttaaaagaagGACTTGACGGAAACAACGCCCTGCACATGTTCTTAAGGAGTCCTGAAACAAAGAAActtttgaactttgaagaaGAGTCTCAATTGATTGCTCAAATACAGgatttatttaaattgaaagaaacaaagaTCAAGCTTCAATCTCAGCTTGGGAGGGAACCAACTTTGGCCGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGCCCTTCAGACACGGCTTCATTCTGGTAATAGAAGTAAAGATAAGCTGGTTCGTGCCACCTTACGCCTTGTAGTTCACATTGCCAAATATTATCAGGGGTGTGGTCTCGGCTTTCAAGACTTATTGCAGGCGGGAAGTGTGGGCCTTACGAGGAGTGTCGAAAAGTTCAAACCCCAAGTTGGTTGCCGGTTCGGTACCTATGCTTACTTGTGGATAAGGCAAACAATAAGGAGGGCCTTAGTTCTCCATTCCAAAACAATCCGTCTGCcgGAGAACTTCTACACCCTTTTGGGCAAGGTTTCGGAAGCAAAGAAATCGTACATTAAAGAAGGAAACCTTCACCCCACCAAAGAAGAAATAGCAAAACAAGTAGGAATTACAGTAGATAAGTTGGAAATGTTGCTATTTTCCTCAAGAACTCCAGTTTCGATGGAGCGACCTGTGTGGGCAGACCATGATACAACCTTCCAGGAGATTACTGCAGACTCTGCAATTGAAATCCCAAATATATTTGTTACAAAACAACTAATGAGGAGCCATGTATGCAACCTCTTAAATACTTTAAGCCCAAAAGAAAGGAGGGTAATCAGATTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTCTGTCAGAAATTGGCAAGGTGCTTGGTGTGTGTAAGGAAAGGGTCAGGCAGTTGGAGAGCAGAGGATTGAAGAAGCTCAAGCAGTCCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTGGTTGTATAG 1650 0.4024 MFSPSAPFPSTILPSSSGMMPREQAVYAVSYPSSSFAAHFPTSVLLQEHRDEYTPLLHTYKEDKTSQATLNTRVMDVASVCEKNSTRDVDESAHKLHLRCHLQNLLAYSPEGDFVSSSSSSSSTMQPADDFQLDALTLAKQALSASIQAAEAAEELKLIKVVDDDDNSLPLGLDVSSVGKNKIVRSIRLKERQSKQRKVSKSKVFDESKYITRKSNVQRRLRVEKKLKEGLDGNNALHMFLRSPETKKLLNFEEESQLIAQIQDLFKLKETKIKLQSQLGREPTLAEWADGVGLSCRALQTRLHSGNRSKDKLVRATLRLVVHIAKYYQGCGLGFQDLLQAGSVGLTRSVEKFKPQVGCRFGTYAYLWIRQTIRRALVLHSKTIRLPENFYTLLGKVSEAKKSYIKEGNLHPTKEEIAKQVGITVDKLEMLLFSSRTPVSMERPVWADHDTTFQEITADSAIEIPNIFVTKQLMRSHVCNLLNTLSPKERRVIRLRFGIEDGYEKSLSEIGKVLGVCKERVRQLESRGLKKLKQSLVSQQLDAYVDLVV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03888 549 Pfam Sigma-70 region 2 313 377 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 Pfam Sigma-70, region 4 481 534 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 PRINTS Major sigma-70 factor signature 361 369 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 PRINTS Major sigma-70 factor signature 506 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 PRINTS Major sigma-70 factor signature 521 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 PRINTS Major sigma-70 factor signature 337 350 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 PRINTS Major sigma-70 factor signature 485 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 311 536 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 Gene3D - 469 548 IPR036388 -
Tsu07g03888 549 Gene3D - 386 463 IPR036388 -
Tsu07g03888 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 386 459 IPR013324 -
Tsu07g03888 549 Gene3D - 144 381 - -
Tsu07g03888 549 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 234 382 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 Pfam Sigma-70 region 3 393 465 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tsu07g03888 549 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 13 548 - -
Tsu07g03888 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 444 545 IPR013324 -
Tsu07g03888 549 CDD Sigma70_r4 475 533 - -
Tsu07g03888 549 Coils Coil 133 153 - -
Tsu07g03888 549 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 13 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03888 Tsu-Chr7 45029567 45035276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03888 - - gmx:100793539 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03888 07 45029567 45035276 Tsu07g03888 07 45029567 45035276 ECH
Tsu01g02394 01 25710828 25716921 Tsu07g03888 07 45029567 45035276 PCT