Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02394 ATGGAATCTGCAAAGACTATGTTTTCTTCAAGAATTCACCACTGGAACACTCTTCCTTCATCTTCTTATACTTCTGTTTTGATGCTCCGGGAACAAGTTGCGCCTACACTCACCTCCTGGTGTACTAGTTTTTCAGCTCAGAATTTTCCTACTTCAGTTCTTTTACAAGAGCAGTGCGATGAGTATAGGCCTTTATTGCATATTTCTAAGAAAGACAAGACATGTCAGGCAACGTTAAATACAACGGAGATGGATATGGTCTCAGTTCATGAAGACAATGACACCGGCAACGTTGATCAGGTAGCGCGTGACTTCAGGCAGCACCTGCATCTCTTGCCTCATTTAGAAAACTTATTAAGTTCCACACAAACAGGAGAAGTGGATGCTTCTGTAACTCTACAGCTTGAAGATAGTTTGCAATGTAATGCAGTTTCTCCCTCAAAACAAGCAGCCTCAGTAGCTGAAAACTTGAGATCAATTAAAGCTGATGAGGATGCTGACAATTCAATTTCTTCTGGTTTAGCCTCTTCCATTTTGGCTGAACCTTCACTTGGAAGAAATAAAACCGTAAGGTCAACACGACATCGAGAGAGACGAGCAAAAGTGAGAAAGGTATCGAAGTCAAAAGTTAAAGATAACGAAACTTATCTTGTCGGAAAGGATGCTACACAGGAAAAACCACATGTacaaaagaagataaataaaggATTGAATCAAAATGGTCTGTTGAACGCATTCTTGCAGAGTCCTGAATCAAAGCAACTTTTAACTTTTGAACAAGAGTGTCAGTTGGTTGCTCAGATTCAGGACCTATTGAGATTGGAAGAATTGAAGACAAGTCTTCAATCTCAATTTGGAAGGGAACCAACTATAGCTGAATGGGCCGAGGGTGCAGGGCTTAACATTCGGAAACTGAAGGCGCAACTTCGTTGTGGTAACAGAAGCAGAGAAAAATTGATTCAAACAAATGTACGCATGGTTCACTATGTTGCTAAAAGTTACCAAGGGCGTGGTCTCAGCCTCGAGGACTTATTACAGGAGGGACGTACAGGTCTCATAAAGAGTGTTAAAATGTTTAAACCTCGATCTGGGTGCCGATTTGCTAGTTATTCATATTGGTGGATAAAACAAGCAATAAGGAAGGCCATATATAATCATTCCAGGACAATCCGTTTGCCGGAGAAGGTATTTAACAACCTTAGCAAGGTCTTGGAGGCAAAGAAATTGTATATGGAAGACGGAAATCTTAACCCAACCAGAGAAGAATTAGCAAGAAGGGTTGGAATGACAGCAGGCAAGGTTGACAGTTTGCTATTTGTTGCAAGAATTCCAATTTCTATGCAGAAAACTGTGGGAGCTGAGACAGATACAATGTTGCAGGAGATTACTGCAGACACTGCAATCGAGTGCCCAAACATAAATGTTTCGAAACAGCTTATGAGACGGCATGTGCTCAACGTCTTAAATAAATTACGCCCTAAAGAAAGAAGGATAATTCGACTAAGATTTGGTTTCGAGGATGGAGAAGAAAGATCTTTATCAGAAATCGGAGAAATATTTGGCATGTCTAGAGAAAGGGTTCGTCAGTTGGAGAACCGGGCACTCTACAAAATCAAGAAGTGTCTTGTCAATCAAGGACTTGATGCTTATGCAGAAATGCTTATATAG 1668 0.4035 MESAKTMFSSRIHHWNTLPSSSYTSVLMLREQVAPTLTSWCTSFSAQNFPTSVLLQEQCDEYRPLLHISKKDKTCQATLNTTEMDMVSVHEDNDTGNVDQVARDFRQHLHLLPHLENLLSSTQTGEVDASVTLQLEDSLQCNAVSPSKQAASVAENLRSIKADEDADNSISSGLASSILAEPSLGRNKTVRSTRHRERRAKVRKVSKSKVKDNETYLVGKDATQEKPHVQKKINKGLNQNGLLNAFLQSPESKQLLTFEQECQLVAQIQDLLRLEELKTSLQSQFGREPTIAEWAEGAGLNIRKLKAQLRCGNRSREKLIQTNVRMVHYVAKSYQGRGLSLEDLLQEGRTGLIKSVKMFKPRSGCRFASYSYWWIKQAIRKAIYNHSRTIRLPEKVFNNLSKVLEAKKLYMEDGNLNPTREELARRVGMTAGKVDSLLFVARIPISMQKTVGAETDTMLQEITADTAIECPNINVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGMSRERVRQLENRALYKIKKCLVNQGLDAYAEMLI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02394 555 Pfam Sigma-70, region 4 487 540 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 Gene3D - 71 388 - -
Tsu01g02394 555 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 14 555 - -
Tsu01g02394 555 Pfam Sigma-70 region 2 319 388 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 392 465 IPR013324 -
Tsu01g02394 555 CDD Sigma70_r4 481 539 - -
Tsu01g02394 555 Pfam Sigma-70 region 3 399 471 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 ProSitePatterns Sigma-70 factors family signature 2. 512 538 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 Gene3D - 392 469 IPR036388 -
Tsu01g02394 555 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 240 389 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 Gene3D - 470 542 IPR036388 -
Tsu01g02394 555 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 315 542 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 451 550 IPR013324 -
Tsu01g02394 555 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 14 555 - -
Tsu01g02394 555 PRINTS Major sigma-70 factor signature 512 527 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 PRINTS Major sigma-70 factor signature 491 503 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 PRINTS Major sigma-70 factor signature 527 538 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 PRINTS Major sigma-70 factor signature 343 356 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g02394 555 PRINTS Major sigma-70 factor signature 367 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02394 Tsu-Chr1 25710828 25716921 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02394 - - gmx:100306289 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02394 01 25710828 25716921 Tsu01g02394 01 25710828 25716921 ECH
Tsu01g02394 01 25710828 25716921 Tsu07g03888 07 45029567 45035276 PCT