Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03811 ATGAATTCTCATTCCATAACTAACCTCCGTAACTCCAACCTCTTACTCAATCACAACCGTCCATCATTTCCAACAACCTTATCACCTTCCCTCTCCTTCCGTTCACTTCCACCACCACAATTCCTCCCTCCGCCGTCGTTCAAACCACCACCAACCAAAGCCACATCCTCCTCAAACAACCTTCCCTCTCGCAAACAACCAAAACCCCCTTCCTTACCTAACCCATTCCAAACCCTAACTTCTCTCTTCTCCCCCGCCATCGAAACCACTTGCATCGTCATTGCCGCTACCGCTTTCTTCTTCATGCGTTTCCATCACACTCCTGTCATCGCCGCCACTCTCTCTCCTCCATCCACCGTCCAAACCACCGAAACCGAAACAGAAACCACCTCAACCGAAACTAAAACTGAAAATGAAAATACATCCACTGAAAGAGAACTAGCGGAGAAGCTAATCGAAGAGCAACTACGCAAAAATCCAAACAACGCTGAAGCACTACGTGATCTAATGGTAGTGAAAATCAAAGCACAAAAAGTTGATGAAGCAATTGAAGTTATAGACCGTTTGATTCAAATCGAGCCTGAAGAAACTGAATGGCCTTTATTGAAAGCTAACATGTATATCTACAACGAAGACCATGAGTCTGCTAAGAAATTGTTTGAAGAGATTCTCAAGAAAGATCCACTTAAAGTGGAAGCTTATCATGGTCTTGTAATGGCAACATCCAATTCAGATGAACCGTTGAAAGGATTGTTGAATAGAGTTGAAAAAGCAATGGAATTGTGCAAGAAACAGAAAGGGGTTTCTGATGTTAGAGATTTTAGGTTATTGGTTGCTCAGATTAAGGTGATGGAGGAGAATTACCCTGAAGCACTTAAAGCTTATCAAGATTTGGTGAAAGAAGAGCCTAGAGATTTTAGGCCTTATCTGTGTCAGGGTATTATATATACCTTGCTTAGAAAGAAAGATGAAGCTGAGAAACAATTTGATCAGTTTCGGAGACTTGTTCCGAAGAATCATCCTTATAAAGagtattttgatgataacatgtATGCTGCCAATATGTTTCCGCAGAAATTCGAGAGGGAAGGAGCTGGTGATAGGAGTTGA 1110 0.4153 MNSHSITNLRNSNLLLNHNRPSFPTTLSPSLSFRSLPPPQFLPPPSFKPPPTKATSSSNNLPSRKQPKPPSLPNPFQTLTSLFSPAIETTCIVIAATAFFFMRFHHTPVIAATLSPPSTVQTTETETETTSTETKTENENTSTERELAEKLIEEQLRKNPNNAEALRDLMVVKIKAQKVDEAIEVIDRLIQIEPEETEWPLLKANMYIYNEDHESAKKLFEEILKKDPLKVEAYHGLVMATSNSDEPLKGLLNRVEKAMELCKKQKGVSDVRDFRLLVAQIKVMEENYPEALKAYQDLVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDQFRRLVPKNHPYKEYFDDNMYAANMFPQKFEREGAGDRS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03811 369 MobiDBLite consensus disorder prediction 34 76 - -
Tsu07g03811 369 Pfam Tetratricopeptide repeat 148 204 - -
Tsu07g03811 369 Pfam Tetratricopeptide repeat 286 338 - -
Tsu07g03811 369 Coils Coil 138 158 - -
Tsu07g03811 369 Gene3D Tetratricopeptide repeat domain 141 266 IPR011990 GO:0005515
Tsu07g03811 369 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 14 349 - -
Tsu07g03811 369 SUPERFAMILY TPR-like 148 345 IPR011990 GO:0005515
Tsu07g03811 369 ProSiteProfiles TPR repeat profile. 163 196 IPR019734 GO:0005515
Tsu07g03811 369 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 14 349 - -
Tsu07g03811 369 MobiDBLite consensus disorder prediction 36 51 - -
Tsu07g03811 369 Gene3D Tetratricopeptide repeat domain 267 346 IPR011990 GO:0005515
Tsu07g03811 369 SMART tpr_5 197 230 IPR019734 GO:0005515
Tsu07g03811 369 SMART tpr_5 163 196 IPR019734 GO:0005515
Tsu07g03811 369 SMART tpr_5 272 305 IPR019734 GO:0005515
Tsu07g03811 369 SMART tpr_5 306 339 IPR019734 GO:0005515
Tsu07g03811 369 MobiDBLite consensus disorder prediction 117 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03811 Tsu-Chr7 44376371 44379556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03811 - - gmx:102661172 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03811 07 44376371 44379556 Tsu01g02533 01 27898902 27903707 PCT