Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03368 atgGCCCTTTTAAGACAATATTTCTTCATCTCATTCACTAtcataatttcttttgttgCTTGTAATAACAACTTGCAAGAGGACCCACTTATTACTACATACGTTGATCATTCACCTTCCAATGATGGTGGTGACACATTATTATTCAAGAATTTCATCaaccaaaacacaaataatattttgagcctAGACAAATTTGATGCCACCTCACGTTCGCTAGAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTGATACCGATGATACACAGGCATTCAAGAAGGCTTGGAAAGTAGTATGTTCTTCAAGGGATGAAGCAATTTTTGTGGTACCTGAAGATTATAATTAtctactcaaaccaatcagattCTCTGGTCCATGCAAATCTAACATAACAGTCCAGatATCTGGAAGTCTTGAAGCATCAGATGATCGATCAGATTATAGTGAAGATCAAAGATATTGGCTTGTATTTCACAATGTTCAAAATCTATTAGTTAATGGTGGTGGAACCATCAATGGAAAAGGAAGTATATGGTGGAAAAACTCATGTAAAAGGAATAAAAAGAAACCTTGCAAGGATGCCCCAACGgcgCTAACATTTGATAATTGTGAGGACTTGATAGTTGAGAATTTGAAGATAGAAAATGCGCAACAAATCCATGTTTCATTTCAAGATTCGATTAACGTTACAACTTTTGGTCTCAACGTATCATCGCCAGAGGATAGTCCTAACACCGATGGGATTCATGTCACCAATACTCAAAACATCAAAATCTCTAGCTCGGTTATAGGAACTGgtGATGATTGTATATCAATTGTACATGGATCTAAGAATGTAGAAGCCACAGACATAACTTGTGGACCAGGCCATGGCATCAGTATTGGAAGCCTGGGGGCTGGAAAATCAAAGGAATTTGTTTCAGGAGTAACAGTGAATGGAGCTAAGATTTCTGGAACTAAAAATGGTGTTCGAATTAAGACTTGGCCGGGAGGTTCAGGAAGTGCTACCAACATAAAATTTCTGAACATTGAAATGGACAATGTGACCAATCCCATAATAATAGACCAGAATTACTGTGACAAGAAAAAAAAGCCATGCAAAAAATcgTGA 1122 0.3467 MALLRQYFFISFTIIISFVACNNNLQEDPLITTYVDHSPSNDGGDTLLFKNFINQNTNNILSLDKFDATSRSLEIVNVNDYGAKGNGDTDDTQAFKKAWKVVCSSRDEAIFVVPEDYNYLLKPIRFSGPCKSNITVQISGSLEASDDRSDYSEDQRYWLVFHNVQNLLVNGGGTINGKGSIWWKNSCKRNKKKPCKDAPTALTFDNCEDLIVENLKIENAQQIHVSFQDSINVTTFGLNVSSPEDSPNTDGIHVTNTQNIKISSSVIGTGDDCISIVHGSKNVEATDITCGPGHGISIGSLGAGKSKEFVSGVTVNGAKISGTKNGVRIKTWPGGSGSATNIKFLNIEMDNVTNPIIIDQNYCDKKKKPCKKS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03368 373 SUPERFAMILY Pectin lyase-like 74 367 IPR011050 -
Tsu07g03368 373 PANTHER ENDO POLYGALACTURONASE 8 372 - -
Tsu07g03368 373 Gene3D - 63 373 IPR012334 -
Tsu07g03368 373 ProSitePatterns Polygalacturonase active site. 287 300 IPR000743 GO:0004650|GO:0005975
Tsu07g03368 373 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Tsu07g03368 373 SMART pbh1 310 331 IPR006626 -
Tsu07g03368 373 SMART pbh1 339 360 IPR006626 -
Tsu07g03368 373 SMART pbh1 207 256 IPR006626 -
Tsu07g03368 373 SMART pbh1 257 278 IPR006626 -
Tsu07g03368 373 Pfam Glycosyl hydrolases family 28 103 371 IPR000743 GO:0004650|GO:0005975
Tsu07g03368 373 PANTHER - 8 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03368 Tsu-Chr7 40109350 40113518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03368 36 373 Glycoside Hydrolase AT2G41850 58.358 1.58e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03368 K01184 - gmx:100797601 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03368 07 40109350 40113518 Tsu07g03368 07 40109350 40113518 ECH
Tsu01g01862 01 18661876 18665499 Tsu07g03368 07 40109350 40113518 PCT