Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01862 ATGGCCTTCAAAAGATATCTCTCATTCATTATGATCATGATTTATTTTGTTGCATGTTATAGTACAACCTTGCAAAAGGACCCACTTAGTTCAATTGTTGATGATTCTCCTTATATTAATGATGGTGGAACATTCAAGGGAATTATCAAGCAATGTACAAATCATGTTGTTTTGAGCTTAAAGAGTAAGTTCGGTGACATTACTCCTTCACTTAAAacatttgatgttgatgattaTGGAGCTCAAGGAGATGGTAAAACTGATGACACAAagGCATTGGAGAAGGTTTGGGAAGTAGCATGTTCAACTGAGGGATCAATTGTTGTGGTAGCTAAAAGGAATTATCTTGTTAAACCAATAAAATTCTCTGGCCCTTGCAAATCCAAAAATGTTGCATTTAAGATCTCTGGAACCCTTCAAGCATCAGATAATCCATCTGATTATAATCAAGATCCTACACACTGGCTTAGGTTTGATAGTATTCAGAAACTAACTGTTAATGGTGGTGGAACCATTGATGGAAATGGAAATATTTGGTGGCAAAATTCAtgcaaaaagaacaaaaagcTTGTAAGAAAGAATATATCACAATTAAAgcataaattttttGCGCTGACTTTGTACAAGTGCAACAACTTGGTAGTTGAGGATTTAACTATACAAAATGGGCAACAAATTCATGTTCAATTCCAAAATTCTGCAAATGTTACAGTTTCTGGTCTAACTGTGACATCCCCTGAGGACAGCCCAAACACCGATGGAATTCATGTCACCAATACTCAAAATATCCAAATCTCAAACTCCACTATTGGAACTGGGGATGATTGTATATCAATTGTAGATGGATCCAAAAATCTACAAGCTACAGACATAACTTGTGGACCAGGTCATGGTATCAGCATTGGAAGCTTAGGGGAAGAGGGTGCCAAGGAATTTGTTTCAGGAATAACAGTTAATGGAGCTAAATTTTCTCAAACTACTAATGGAGTAAGAATCAAGACATGGCagGGAGGGTCAGGAAGTGCAAGTAACATCAAATTTCAGAATATTGAAATGAACAATGTGGCCAACCCCATAATTATAGATCAAAACTACTGTGATCAAAAGAGTCCATGCCAACAACAGAAATCCGCGGTTCAGATAAGGAACGTGTTGTACCAGAACATAAAAGGCACAAGTGCTTCTGATGTGGCTGTGCAATTTAATTGCAGCCAGAACTTCCCATGCCAAGGGATAGTATTGCAAAACATAGACCTGGAGCTTGAAGGTGGAGGAGAAGCTAAGGCTTCATGCAACAATGTTAAGTTGTCATACAGAGGAAATGTTAACCCTCGCTGCAATTACATTGAGGAAATTAATGAACTTGGTGGCTTTAAAAGACTTATAGAATGA 1392 0.3621 MAFKRYLSFIMIMIYFVACYSTTLQKDPLSSIVDDSPYINDGGTFKGIIKQCTNHVVLSLKSKFGDITPSLKTFDVDDYGAQGDGKTDDTKALEKVWEVACSTEGSIVVVAKRNYLVKPIKFSGPCKSKNVAFKISGTLQASDNPSDYNQDPTHWLRFDSIQKLTVNGGGTIDGNGNIWWQNSCKKNKKLVRKNISQLKHKFFALTLYKCNNLVVEDLTIQNGQQIHVQFQNSANVTVSGLTVTSPEDSPNTDGIHVTNTQNIQISNSTIGTGDDCISIVDGSKNLQATDITCGPGHGISIGSLGEEGAKEFVSGITVNGAKFSQTTNGVRIKTWQGGSGSASNIKFQNIEMNNVANPIIIDQNYCDQKSPCQQQKSAVQIRNVLYQNIKGTSASDVAVQFNCSQNFPCQGIVLQNIDLELEGGGEAKASCNNVKLSYRGNVNPRCNYIEEINELGGFKRLIE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01862 463 PANTHER ENDO POLYGALACTURONASE 5 451 - -
Tsu01g01862 463 SMART pbh1 313 334 IPR006626 -
Tsu01g01862 463 SMART pbh1 342 363 IPR006626 -
Tsu01g01862 463 SMART pbh1 233 259 IPR006626 -
Tsu01g01862 463 SMART pbh1 210 230 IPR006626 -
Tsu01g01862 463 SMART pbh1 260 281 IPR006626 -
Tsu01g01862 463 PANTHER - 5 451 - -
Tsu01g01862 463 ProSitePatterns Polygalacturonase active site. 290 303 IPR000743 GO:0004650|GO:0005975
Tsu01g01862 463 Gene3D - 67 452 IPR012334 -
Tsu01g01862 463 SUPERFAMILY Pectin lyase-like 70 448 IPR011050 -
Tsu01g01862 463 Pfam Glycosyl hydrolases family 28 107 435 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01862 Tsu-Chr1 18661876 18665499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01862 5 446 Glycoside Hydrolase AT3G57510 51.230 3.09e-146 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01862 K01184 - gmx:100777940 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01862 01 18661876 18665499 Tsu01g01862 01 18661876 18665499 ECH
Tsu01g01862 01 18661876 18665499 Tsu07g03368 07 40109350 40113518 PCT