Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03243 ATGTGGACTCTTCGTCGAGCTTCATTACCTCTCAGtagGATGAGAGGGTTAAATGTAAGGGTTTCTTGTGTCAAATTAATGCCAAATACTTGTGCTGAAAATGAGGCTGAAATCTGTGATTCTCCTAAAATAGTTTATGGTAATGACGGATTTTTGTCGCGGAATAGATGTTATCATTCTGGATATGGTTCTATGGGATTTTGTGTTGGTAGACGCGAGCTTTCTTCGGAAGCCGGTGCAAAAGATACTAAAGACGAGTATGATGATGTTTTGGAGGAGGGGTTTTCAGAATTGGAGGGTGAATTGGATGGTGAAGGAGAAAAAGTGTTGGATTCTGATTCAGAAACAGAACTGTCTGATGATAGTGTTAGCGAGGAATCTGATATTGAGGAACCACACAATGAGCTGGAGTTACCGTTATCGCACGATGAGGATGGGGTTTCGAAGGTGAAGAGATTTAGTCGAAAAAGGGTTGAGTCTGAACTATTCAAGGCGATTATGGATGCTCCGGGTCTCTCTATTCATACGGCTTTGGATAAGTGGGTTGAAGATGGGAAGGAACTGAGCAGAGAGGAGATATCGTTGGCTATGGTTAATCTTCGGAAACATAAGATGTATGGGAGAGCTTTGCAGCTCTCGGAGTGGCTTGAATCAAAAAAGCATCTTGAGTTTGTTGAAAGGGATTACGCTTCCCGACTTGATTTGATTGCCAAACTGCATGGACTATATAAGGCAGAAGTATACGTTGAGAGTATTCCAGAATCATTTAGAGGGGAGATAATATACCGAACTTTAATGGCTAACTGTGTGACTCAGAACAATTTGAAGAAAGCAGAGgagatttttaataaaatgaaggATTTAGAGTTTCCTCTTACGGTGTTTGCATGCAATCAGTTGCTCATTCTGTATAAGAGGAATGACAGAAAGAAAATAGCTGATGTGTTATTATTGATGGAGCACGAGAATGTCAAACCTTCTcctttgacttttaaaattttaatagaaGTAAAAGGTCAGTCTAATGATATTGATGGAATGGAtaaaattgttgataaaatGAAGGATGAGGGTATTGAACCGGATGTCCGAACAAAGGCAGTTTTGGTTGGACATTACATCGCAGCTGGGCTTGTTGATAAAGCTAAAACGTTGTTGAAGGAGATGGAAGGTGAAAACTTGAAGGAGAATCGGTGGGTATGTCAGGAATTGCTTCCTCTCTATGCAAACTTGGGCATGGCAGATGAAGTGGGAAGAGTTTGGAAGGTCTGTGAGACACAGCCTTGGCTTGAGGAGTGTTTGGCTGCAATTGAAGCCTGGGGCAAGTTGGGGAAAATCAATGAAGCAGAGGCAGTTTTTGAGAGGATGTCAAAAAAGTGGAAGCTAACATCCAAGAATTGCTCAGTACTACTGAAGGTTTATGCAAACCACAAGATGCTAACGAAGGGCAAAGATCTTATTAAGCGAATGGCAGATAGTGGGTGTCGAATAGGCCCGTTGACCTGGGATGCATTGATCAAACTTTATGTGAAAGCTGGGGAAGTGGAGAAGGCTGATAGTGTTCTTCAGAAGGCAGTCCTGCAGAATCAGGTGAAGCCATTATTTTCTTCCTATATCATTATTCAGGAGCAGTATGCTAAGAGGGGTGACATCCATAATACGGAAAAGATCTTTTTTAGAATGAAACAAGTTGGTTATGCTCCTCGAATAAGGCAGTACCAAGTTCTTATAGAGGCCTATATAAATGCCAAGGTTCCAGCTTATGGGATTAGGGACAGGTTGAAAGCAGATAATATATATCCCAACAGAAATTTGGCTAACATGTTGATTCAAGTTGATGGATTTAGGAAGAGTCAGGTTTCCGATTTGCTTGATTGA 1878 0.4026 MWTLRRASLPLSRMRGLNVRVSCVKLMPNTCAENEAEICDSPKIVYGNDGFLSRNRCYHSGYGSMGFCVGRRELSSEAGAKDTKDEYDDVLEEGFSELEGELDGEGEKVLDSDSETELSDDSVSEESDIEEPHNELELPLSHDEDGVSKVKRFSRKRVESELFKAIMDAPGLSIHTALDKWVEDGKELSREEISLAMVNLRKHKMYGRALQLSEWLESKKHLEFVERDYASRLDLIAKLHGLYKAEVYVESIPESFRGEIIYRTLMANCVTQNNLKKAEEIFNKMKDLEFPLTVFACNQLLILYKRNDRKKIADVLLLMEHENVKPSPLTFKILIEVKGQSNDIDGMDKIVDKMKDEGIEPDVRTKAVLVGHYIAAGLVDKAKTLLKEMEGENLKENRWVCQELLPLYANLGMADEVGRVWKVCETQPWLEECLAAIEAWGKLGKINEAEAVFERMSKKWKLTSKNCSVLLKVYANHKMLTKGKDLIKRMADSGCRIGPLTWDALIKLYVKAGEVEKADSVLQKAVLQNQVKPLFSSYIIIQEQYAKRGDIHNTEKIFFRMKQVGYAPRIRQYQVLIEAYINAKVPAYGIRDRLKADNIYPNRNLANMLIQVDGFRKSQVSDLLD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03243 625 Pfam Pentacotripeptide-repeat region of PRORP 262 420 IPR033443 -
Tsu07g03243 625 Gene3D Tetratricopeptide repeat domain 258 436 IPR011990 GO:0005515
Tsu07g03243 625 MobiDBLite consensus disorder prediction 101 115 - -
Tsu07g03243 625 Gene3D Tetratricopeptide repeat domain 437 624 IPR011990 GO:0005515
Tsu07g03243 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 533 IPR002885 -
Tsu07g03243 625 Pfam Pentatricopeptide repeat domain 531 581 IPR002885 -
Tsu07g03243 625 MobiDBLite consensus disorder prediction 101 135 - -
Tsu07g03243 625 Pfam PPR repeat 437 459 IPR002885 -
Tsu07g03243 625 Pfam PPR repeat 468 495 IPR002885 -
Tsu07g03243 625 Pfam PPR repeat 501 524 IPR002885 -
Tsu07g03243 625 MobiDBLite consensus disorder prediction 116 132 - -
Tsu07g03243 625 PANTHER OS12G0527900 PROTEIN 36 625 - -
Tsu07g03243 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Tsu07g03243 625 PANTHER OS01G0280400 PROTEIN 36 625 - -
Tsu07g03243 625 TIGRFAM PPR: pentatricopeptide repeat domain 501 524 IPR002885 -
Tsu07g03243 625 TIGRFAM PPR: pentatricopeptide repeat domain 261 291 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03243 Tsu-Chr7 38720402 38724095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03243 165 525 EF-hand Containing Proteins AT1G02150 25.272 3.15e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03243 - - mtr:MTR_7g089770 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03243 07 38720402 38724095 Tsu01g03964 01 47221998 47222566 ECH
Tsu07g03243 07 38720402 38724095 Tsu07g03243 07 38720402 38724095 ECH