Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03964 ATGGCGAAGGGCGAGAAAAAGCCAGCGGAAAAGAAGCCCGCAGAGAAATCACCAGCGGAGAAAACCAAGGCTGAGAAGAAAATTCCAAAGGAAGCCTCATCCACCgacaagaagaaaaagaaacacaagaagagcgttGAAACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAGGTTCATCCTGATATCGGAATCTCAAGCAAAGCTATGGGGATCATGAACAGTTTCATCAATGACATTTTTGAGAAACTCGCTCAGGAATCTTCTAGACTCGCTCGCTACAACAAGAAACCTACAATCACCTCTCGCGAGATCCAGACTGCTGTTCGTCTTGTTCTTCCCGGAGAGCTCGCTAAGCACGCCGTATCTGAAGGAACTAAGGCTGTTACGAAATTCACTAGCTCTTGA 411 0.4307 MAKGEKKPAEKKPAEKSPAEKTKAEKKIPKEASSTDKKKKKHKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03964 136 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g03964 136 PANTHER HISTONE H2B 4 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 SUPERFAMILY Histone-fold 24 136 IPR009072 GO:0046982
Tsu01g03964 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 Pfam Core histone H2A/H2B/H3/H4 6 112 IPR007125 GO:0003677
Tsu01g03964 136 PANTHER HISTONE H2B 4 136 - -
Tsu01g03964 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tsu01g03964 136 MobiDBLite consensus disorder prediction 1 45 - -
Tsu01g03964 136 Gene3D Histone, subunit A 6 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03964 Tsu-Chr1 47221998 47222566 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03964 K11252 - gmx:100305731 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03243 07 38720402 38724095 Tsu01g03964 01 47221998 47222566 ECH
Tsu01g03964 01 47221998 47222566 Tsu01g03964 01 47221998 47222566 ECH