Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01809 ATGGCAACTGcaacaaaagttgtttttttaattttgttttttgcactAATTTATGTTAATGCTAATCCAAGAATTAGGCCAGAAACTGGTCCTGATATTTACAAAGGTAAAAATGTAGCCAAAGATGCTCTTGCTCCTGGAGAGAAAGTTGTTAATGTTATGAGCTTTGGAGCTGTAGGTGATGGTGAATTTGATTGCACTCAGGCTTTCATGGATGGATGGCGAGAAGCATGCAAGTCCAATGTACAAGCCAGACTTCTAATCCCTGAAGGCAGATTCCTTGTTTCTTCAATGTTCTTTTCAGGCCCATGTTTGACTCCAGGACCTATAACAGTCCAAGTTATAGGCACAGTTTTGGCCACAACAGATATAAGTGAATATGAGAATAGTGAATGGCTCATGTTTCAACATATAGAAGGGCTTAAACTTATTGGTGGAGGTACTTTTGATGGGCAGGGTCAGTCTTCATGGGAACATAATCAAGATTGTGAAGCTGACCCAACTGACCAATGTGTTAGGGCACCAAGTAatcttttttttgataaagtgACAAATGGAGTTATACAAAACATCAAATCTGTAAATTCAAAAGGCTTTCACTTTTTTGTGACTAATTGTGGAAACATGAGACTTCGATTAATTAAGATCAATGCACCAGCTACAAGCCCAAATACCGATGGTATTCATCTAAGTCATTCAATCAATGTGAAAATATCAAGAACAAATATTGAGACGGGGGATGATTGTGTCTCCATGATACAAGGAGTCAATAATGTTACAATCAATAGACTCAAGTGTGGTCCAGGACATGGTATAAGTATTGGAAGTCTTGGAAAGTATAAAGATGAGCTACCTGTGGGTGGTATTAGAGTCCAGGCAAGCACATTAGTTGGCACAACAAATGGCCTCAGAATTAAATCATGGCCAGATAAGTATCCAGGTTCTGCATCAGATATCAATTTTGTTGGCATTACtatggaaaatgttaaaaatcCTATCATTATTGACCAAGAATATGAATGCCATCCAGAATGCAAAAAGAAGCCATCACTCGTAAAGATAAACAATATAGgatttataaatataaaggGAACAACAATTTCTGAAATTGCAGTAGACTTAAGATGTAGCCAGCAATTCCCATGCCAAAATGTTACACTTCGTAACATAGACCTCAAGCTTGGAACCAACCCTCCTACATCTAGATGTTCCAATATCAAACCTATCTATGGTGGCATACAAATACCACCACCATGCCCATAA 1263 0.361 MATATKVVFLILFFALIYVNANPRIRPETGPDIYKGKNVAKDALAPGEKVVNVMSFGAVGDGEFDCTQAFMDGWREACKSNVQARLLIPEGRFLVSSMFFSGPCLTPGPITVQVIGTVLATTDISEYENSEWLMFQHIEGLKLIGGGTFDGQGQSSWEHNQDCEADPTDQCVRAPSNLFFDKVTNGVIQNIKSVNSKGFHFFVTNCGNMRLRLIKINAPATSPNTDGIHLSHSINVKISRTNIETGDDCVSMIQGVNNVTINRLKCGPGHGISIGSLGKYKDELPVGGIRVQASTLVGTTNGLRIKSWPDKYPGSASDINFVGITMENVKNPIIIDQEYECHPECKKKPSLVKINNIGFINIKGTTISEIAVDLRCSQQFPCQNVTLRNIDLKLGTNPPTSRCSNIKPIYGGIQIPPPCP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01809 420 PANTHER POLYGALACTURONASE 2 419 - -
Tsu07g01809 420 Gene3D - 38 414 IPR012334 -
Tsu07g01809 420 SUPERFAMILY Pectin lyase-like 47 419 IPR011050 -
Tsu07g01809 420 Pfam Glycosyl hydrolases family 28 78 407 IPR000743 GO:0004650|GO:0005975
Tsu07g01809 420 ProSitePatterns Polygalacturonase active site. 263 276 IPR000743 GO:0004650|GO:0005975
Tsu07g01809 420 PANTHER - 2 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01809 Tsu-Chr7 17921620 17926996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01809 50 419 Glycoside Hydrolase AT4G18180 45.103 2.62e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01809 K01213 - gmx:106796220 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01809 07 17921620 17926996 Tsu07g01809 07 17921620 17926996 ECH
Tsu04g04262 04 50770140 50772130 Tsu07g01809 07 17921620 17926996 PCT