Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04262 ATGGCCATTGCAAAGAGTGCTACTATTCTTATTTTGTTCTTTGCATTGGCCAATTATGCGAATGCCGGGGACATTTCAAGAGTAAGGCCACCCGTTGGTCAAGACGTTTTCGGGGGTAAAAATAATGCTAAGGATGTCCTCCTTCCAGGGGAAAAAATAATTAGTGTCTTGAGTTTTGGCGCCAAAGGTGATGGAACGACTGATTGCACTCAGGCTTTCATGTCTACATGGCAAGCAGTCTGCAAACAACCGGGACAAAACCGGTTTTATGTTCCACTTGGTACATATTTGGTTTCTTCAATGTTTTTTACGGGACCATGTCTTGCCCCAAATCCAGTAACAATTCAAGTGGAAGGGACAGTTTTGGCTACTACCGATATTTCTGAGTACGAAAACGGAGAATGGCTCATGTTTGAACACATCAATGGCCTAAAAATCATGGGTGGAGGTACTTTTGATGGACAGGGTCAAGAATCATGGAAATATACTGAGAATTGTGAAACTAGCAATAAAGCATGTGCAAGAAACCCTAGTAGTTTGTTTTTCGCGGAAGTccaaaatgtaattataagtcaCATTAAATCACTGAATCCCAAAGGCTTTCACATATTCGTTACCAAAAGTTCAAACGTTAGGTTGCGCAGACTTAAGATCATTGCACCTGAAACTAGCCCCAACACTGATGGCATTCATATTAGTAGCTCTGTCAATGTAATTATAGCCAGAAACACCATTCAAACCGGAGATGATTGTGTCTCTATGATACAAGGTACTGAACAAGTTTTCATCAACAGACTCAGGTGTGGACCTGGACACGGTATCAGTATTGGTAGTCTTGGAAAGTATCCCAATGAGCGAGAGGTGAGAGGTATTAGTATAAAAAACAGTCAATTGATCGGCACAACCAATGGTTTGAGATTAAAAACATGGCCAGACAAATATGGAGGCGCCGCATCGGAGATAAGTTTCTTTAACATTAACATGACAGATGTTAAAAATCCAATCATTATTGATCAAGAGTATGAATGTCATCCAAACTGCCAAAAGAAGCCATCACTGGTGAAGATAGTAGATGTTCATTTTGCAAATGTAAGAGGAACTACAACATCACCAATTGCAGTGGATATGAGATGCAGCAAGACATTTCCATGCACGGGTGTTACAATTCGCGATATCGACCTAAAGTTTCAAAATGCACCTTCACAAGCTAGATGTGTTAATGTTAAGCCTCTCTATAGTGGCATGCAAAACCCACCAGCCTGCCCATAA 1269 0.4035 MAIAKSATILILFFALANYANAGDISRVRPPVGQDVFGGKNNAKDVLLPGEKIISVLSFGAKGDGTTDCTQAFMSTWQAVCKQPGQNRFYVPLGTYLVSSMFFTGPCLAPNPVTIQVEGTVLATTDISEYENGEWLMFEHINGLKIMGGGTFDGQGQESWKYTENCETSNKACARNPSSLFFAEVQNVIISHIKSLNPKGFHIFVTKSSNVRLRRLKIIAPETSPNTDGIHISSSVNVIIARNTIQTGDDCVSMIQGTEQVFINRLRCGPGHGISIGSLGKYPNEREVRGISIKNSQLIGTTNGLRLKTWPDKYGGAASEISFFNINMTDVKNPIIIDQEYECHPNCQKKPSLVKIVDVHFANVRGTTTSPIAVDMRCSKTFPCTGVTIRDIDLKFQNAPSQARCVNVKPLYSGMQNPPACP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04262 422 PANTHER - 2 421 - -
Tsu04g04262 422 SUPERFAMILY Pectin lyase-like 50 421 IPR011050 -
Tsu04g04262 422 Gene3D - 48 419 IPR012334 -
Tsu04g04262 422 Pfam Glycosyl hydrolases family 28 81 409 IPR000743 GO:0004650|GO:0005975
Tsu04g04262 422 SMART pbh1 185 205 IPR006626 -
Tsu04g04262 422 SMART pbh1 288 309 IPR006626 -
Tsu04g04262 422 SMART pbh1 208 234 IPR006626 -
Tsu04g04262 422 SMART pbh1 235 278 IPR006626 -
Tsu04g04262 422 SMART pbh1 384 410 IPR006626 -
Tsu04g04262 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
Tsu04g04262 422 PANTHER POLYGALACTURONASE 2 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04262 Tsu-Chr4 50770140 50772130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04262 53 421 Glycoside Hydrolase AT4G18180 42.228 7.40e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04262 K01213 - gmx:100800324 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04262 04 50770140 50772130 Tsu04g04262 04 50770140 50772130 ECH
Tsu04g04262 04 50770140 50772130 Tsu07g01809 07 17921620 17926996 PCT