Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01789 ATGGGTGTACAAATTCAGGAATATTCTACCACTGTTTCTGTGCCCCCAGCTAGGCTCTTCAAAGCCATGTCAATAGATATTCATAATCTTTTCCCAAAGATTGTGGAAATCATTGAGAGTGTTGAGCTCTCTGAAGGTACTGGTGAGGCAGGAACCATCAAGAAGCTCAACATAATTGAAGGTGGAAAACCCAAGTATGTGCTACATAGAGTGGATGAAATTGATGAGGCCAAATTTGTGTACAACTTTAGCATTACTGGTGGCACTGGTTTGGCTGAAACATTGGAAAAGGTCTCATTCAAGAGCCAATTGGTGGAAACACCAAATGGTGGAACCATTAGGAATGTACATGTTGAATATTTTACCAAAGGTGATTATGTTGTTACTGAAGAAGAGCTGACAGCTGGTAAAGCAAAGGTTGAAGGACTTATAAAGATTTGTGAAGGTTTCCTTTTGGCAAATCCTGATTATTGA 474 0.3966 MGVQIQEYSTTVSVPPARLFKAMSIDIHNLFPKIVEIIESVELSEGTGEAGTIKKLNIIEGGKPKYVLHRVDEIDEAKFVYNFSITGGTGLAETLEKVSFKSQLVETPNGGTIRNVHVEYFTKGDYVVTEEELTAGKAKVEGLIKICEGFLLANPDY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01789 157 CDD Bet_v1-like 7 145 - -
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu07g01789 157 PANTHER PATHOGENESIS-RELATED PROTEIN 10 1 157 - -
Tsu07g01789 157 Pfam Pathogenesis-related protein Bet v 1 family 6 153 IPR000916 GO:0006952
Tsu07g01789 157 SUPERFAMILY Bet v1-like 6 157 - -
Tsu07g01789 157 Gene3D - 2 157 IPR023393 -
Tsu07g01789 157 PANTHER - 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01789 Tsu-Chr7 17690937 17692978 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01789 - - gmx:100527073 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01789 07 17690937 17692978 Tsu04g04282 04 50936060 50936962 PCT