Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04282 ATGGGTGTCTTCACATATGAGCAAGAAACCACCTCTACTGTTGCCCCTGCTAAGCTTTACAAAGCAGTGGTACATGATGCCGATGACATTATCGTAAAGGCTGTTGACGACATCAAAAGTGTTGAAATCGTTGAGGGAAATGGTGGCCCCGGAACCATCAAGAAGCTCAATTTCGTTGAGGGAGGACAAAACTTGTATGTGTTGCACAAAATAGATGCAATTGATGAAGCAAATTTGGGATACAATTACAGTATTGTTGGTGGAGCTGGTTTGTCAGACACAGTGGAGAAGATATCATTTGAAGCAAAATTGGTTGAAGGACCAAATGGAGGATCTATTGGTAAAATGACAGTTAAAGTCCAAACCAAAGGAGATGCTAAGCCTATTGAAAAGGAAGTTGAAGAAGGCAAAGCTAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTACGTGTTGGCTAATCCTAATTACTGA 474 0.4156 MGVFTYEQETTSTVAPAKLYKAVVHDADDIIVKAVDDIKSVEIVEGNGGPGTIKKLNFVEGGQNLYVLHKIDAIDEANLGYNYSIVGGAGLSDTVEKISFEAKLVEGPNGGSIGKMTVKVQTKGDAKPIEKEVEEGKAKGDALFKAIEGYVLANPNY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04282 157 CDD Bet_v1-like 4 151 - -
Tsu04g04282 157 Gene3D - 2 157 IPR023393 -
Tsu04g04282 157 SUPERFAMILY Bet v1-like 2 157 - -
Tsu04g04282 157 PANTHER - 1 157 - -
Tsu04g04282 157 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Tsu04g04282 157 PANTHER ABA-RESPONSIVE PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04282 Tsu-Chr4 50936060 50936962 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04282 - - gmx:100500525 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04282 04 50936060 50936962 Tsu04g04282 04 50936060 50936962 ECH
Tsu07g01789 07 17690937 17692978 Tsu04g04282 04 50936060 50936962 PCT