Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01343 ATGTTGATGATCTCTGATGAAAGAGATAATGATGTGTTCTTTGACTCATCCGATTGTTTGTCGTCGCCTTCTCGAGAATCTCTTTCGACAAGACCAGATTTTGGTTATGAGATTTGGTTGAATGAGCCTCTTAGTGTGAaggaaagaaaggaaaaatttCTACAAGTGATGggttttgttgatgatgatgattctaaGTTTTGTGAGGAGAGGATCATGGATTGCAGTCGAGCAGAATCGAGTGGTTGCATTTTGCCTTTAGGAAATGAAGACACTTCTGAGGCACAAGTCTTGTTTGATCCAGAAGATGATGACGACAAACGAGATGCGAGAGTTGAAGGAACCGAAGATGAAGTAAGAGATAGAGAAGCTGAGATTCCAGAAGAATTTCATGCTATTGAtattggtaaaaataaaaagaaaaattggtgGAAGCAATTTGTAAAGAGTGGGAAACTAGCTGGAGTGAAAGTTAGATCAAAATTTAGTAATGCGAGTACGAATAAAACTCATCGAATCAATGTAAAGCACAATAAGAAAAGCTGGAATGAGTTCAGTGCTGTGTATATTGGACAAGAGATTAGAGCACACAAAGGTCTAATTTGGACTATGAAATTTAGTCCTAATGGTCAGTATCTAGCCACTGGAGGTGAAGATGGTGTTATTCGTGTATGGCGTGTGTCGTCGCTGAATGCTTCGAGTATTTTCTTTGCTAAAGAAGACAGCCCTGTCAACAAATTGAAACATGACTTGTCTATTTCTCCGAAGAAATGCTCGAGTCAATCTCCTGCTGTTCTTCCAAGTAAGATTCTCAAAATCGAAGAATCCCCTCTGCAAGAACTATATGGTCATTCCAGTGATGTGATGGATTTGGCTTGGTCTGATTCAGATATGCTCCTTTCGTCGTCAATGGATAAAACAGTCCGCATGTGGAAAATTGGTTGCAATCGATGTTTGAAAGTTTTCCATCACAAAGATTATGTGACATGCATTCAATTCAACCCGGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTCCGAGTATGGGGTGTACATGAAGAACGAGTTGTTGACTGGGCAGACATACGAGATGTCATAAGTGCTATAAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGTTCCCTTTCTGGTACTTGCCGATTTTATGTTGCTTCAGGCAAACAATTCCAGCTTGAGGCGAAGATTCGTGTcaacgaaaagaaaaaaagatcaTCTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGAAAAACCATCAGAGAGTTATGATCACATCACGAGATTCCAAAGTTAGAATATTGGAAGGCGGTGAACTTGTTCAGACATACAAAGGCCTTCCAATGTCAGGAAGTCAGATGTCAGGTTCATTTACATCAAATGGAAAACACATAATTTCAGTCGGGGAGGACTCTCGTGTGTATATTTGGAACTTCAATGACTCGGAAAACTATTTTTCCAAACAGAAAAAAGCCGAGAGTTCTTGTGAGTACTTTCGCTCCAAGGGGGTTACCGTCGCAATACCTTGGTCAGGATTGACAGCAGAAACAGGCTGCACTCTCAGCGATTTTTCCAGCTATTCTTCCATAAAGCAACGCCAATGCGTTAGGGAATCAGAACGCTTTTCGTTTGGTAGTTGGTTCTCCATTGATGGTTCGTGCCGAGGTTCTATGACATGGCCTGAAGAGAAACTTCCCAGTTGGGATTCACCTCTTTCAGAAGAAGAATTTGATGATGAGGAGCTATGTCTTAACGATCTATGGGATGACAATTGTGTACCAGAAACATGGGGACTATCCGTCGTTGCAGCTGGTCTTGACGGAACCATCAAGACATTTCACAACTTCGGATTTCCTGTTAGGCTATAA 1902 0.3964 MLMISDERDNDVFFDSSDCLSSPSRESLSTRPDFGYEIWLNEPLSVKERKEKFLQVMGFVDDDDSKFCEERIMDCSRAESSGCILPLGNEDTSEAQVLFDPEDDDDKRDARVEGTEDEVRDREAEIPEEFHAIDIGKNKKKNWWKQFVKSGKLAGVKVRSKFSNASTNKTHRINVKHNKKSWNEFSAVYIGQEIRAHKGLIWTMKFSPNGQYLATGGEDGVIRVWRVSSLNASSIFFAKEDSPVNKLKHDLSISPKKCSSQSPAVLPSKILKIEESPLQELYGHSSDVMDLAWSDSDMLLSSSMDKTVRMWKIGCNRCLKVFHHKDYVTCIQFNPVDENYFISGSIDGKVRVWGVHEERVVDWADIRDVISAISYQPDGKGFVVGSLSGTCRFYVASGKQFQLEAKIRVNEKKKRSSGNKITGIQFSQKNHQRVMITSRDSKVRILEGGELVQTYKGLPMSGSQMSGSFTSNGKHIISVGEDSRVYIWNFNDSENYFSKQKKAESSCEYFRSKGVTVAIPWSGLTAETGCTLSDFSSYSSIKQRQCVRESERFSFGSWFSIDGSCRGSMTWPEEKLPSWDSPLSEEEFDDEELCLNDLWDDNCVPETWGLSVVAAGLDGTIKTFHNFGFPVRL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 321 IPR001680 GO:0005515
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 363 IPR001680 GO:0005515
Tsu07g01343 633 MobiDBLite consensus disorder prediction 99 122 - -
Tsu07g01343 633 Pfam WD domain, G-beta repeat 317 353 IPR001680 GO:0005515
Tsu07g01343 633 Pfam WD domain, G-beta repeat 193 225 IPR001680 GO:0005515
Tsu07g01343 633 Pfam WD domain, G-beta repeat 276 312 IPR001680 GO:0005515
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 353 - -
Tsu07g01343 633 PANTHER WD REPEAT DOMAIN 44 5 633 IPR040324 -
Tsu07g01343 633 SMART WD40_4 274 312 IPR001680 GO:0005515
Tsu07g01343 633 SMART WD40_4 315 354 IPR001680 GO:0005515
Tsu07g01343 633 SMART WD40_4 356 395 IPR001680 GO:0005515
Tsu07g01343 633 SMART WD40_4 187 226 IPR001680 GO:0005515
Tsu07g01343 633 SMART WD40_4 448 489 IPR001680 GO:0005515
Tsu07g01343 633 SMART WD40_4 400 447 IPR001680 GO:0005515
Tsu07g01343 633 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Tsu07g01343 633 PRINTS G protein beta WD-40 repeat signature 299 313 IPR020472 -
Tsu07g01343 633 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 229 - -
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 468 498 IPR001680 GO:0005515
Tsu07g01343 633 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 5 633 - -
Tsu07g01343 633 Gene3D - 179 519 IPR015943 GO:0005515
Tsu07g01343 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Tsu07g01343 633 SUPERFAMILY WD40 repeat-like 192 495 IPR036322 GO:0005515
Tsu07g01343 633 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01343 Tsu-Chr7 11821166 11824653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01343 188 394 Miscellaneous Gene Families AT5G08390 23.113 7.74e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01343 K20241 - gmx:100780979 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01343 07 11821166 11824653 Tsu07g01343 07 11821166 11824653 ECH
Tsu02g00678 02 5720561 5723827 Tsu07g01343 07 11821166 11824653 PCT