Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00678 ATGCTGAGTTCTGATGATGATGGAGATATTGATGTATTCTATGACTCATTGGATAGTTTGTCAAGTCAAGATTCTGTTTTAGTCGAATTAGAGGTTGGTTTTGAAAGGCTTCGTTGCGATGATTATGATAAAATTTGGGTGAATGAGCCTGTTAGTGTGAAGGAAAGAAGGGAACGTTTTCTGCAGGGTATGTGTTTAGTTGATACTTTTTCGAAGATTTGTTTACAAGAGAGAATGGTGAGCTTTGATGACTCATCGATCACCTCGGGGATGGAGAGGATCACGGAGTGTAGTGGAGCAGTCTCACATGTATGCATTTCTTCTTCTGATGAAGTATCTAAGAAGGTTGTTTTCTCTGGATGGAATTCAGCTTCCGAAGCTGAAGTCTtgtttaaagaaattaaagggCGTCGTGAGGATGAAGTGGATGCAAGTTTTCAAGAGTACAGCCAGAGAGAAGGTGAGGCACAAGAAGAATTTCGGCATTTCGATAAGATTAGGAAAAATTGGTGGAAGTGCTTTGTAAACATAAGGAAAAGCGACGAAGGAAAAGTTAGATCAAAATTGACTACCGCGACAAATAAAACTCGTAGAGTAAAAGTAAGACAGAATAAAAAGAGGTGGCTTGAGTTCAGTGAGCTATACATCGGACAAGAGATTAAAGCTCACAAAGGATTAATCTGGACTATGAAATTCAGTCCTAACGGTAAGTATTTAGCTAGTGGAGGTGAAGATGGTGTTGTGCGCATATGGCGCATTATGTCACGTGACAAAAGCCcatcttttattttccttcaaaaagatatttttcaaattgaCGAATCACCGCTGCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCCTGGTCTAATTCAGATATTCTTCTCTCGTCTTCTATGGATAAAACTGTCTGCTGTTGGAAAATCGGCTGTGATCAATGTCTAAGTGTTTTCCCTCACAAAGACTTCGTGACGTGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGATCGATAGATGGTAAAGTTCGAATATGGGGGATACGTGAAGAGCGAGTTGTTGATTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGACGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACGTGCCGTTTTTATGTTGCTTCAGgaaaatatttcaaGCTTGAGGCACAGATAGGTATCTGTGGAAAGAAGAAAACGTCAGGCAACAAGATTACCAGCATTCAGTTCTTTCAAAACAACAGTCAAAGAATTATGATCACATCTGAAGATTCCAAAATTCACATATTGGATGGAATTGAGATTGTTCAGAAATACAAAGGCCTTCCGCGATCGGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGGAAACATATAATTTCAGTTGGAGAGGACTCGCACGTGTATATATGGAACTTCAATGACTCAAAAACTGCttctttgaaaaaaacaaaatccgAGCATTCTTGTGAGTATTTTTCTTTCAAGGGTGTAACTGTTGCAATACCTTGGTCCGGAGTGAAAGCAGAAGATAGAAATGACAATAGAAATAACTTTTCTCACCATTCTTCAGAAACGAAAACCAAACTAGAATTTGGTTGTGAGGTTAGAGATACAGAACAACGTTTTTCTCTCGGTAATTGGTTCTTCATCGATGGTACATGTCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCAACATGGGATTTACCTCTTGTAGAAGATGAATATGATCGTAAAACATTATGTCGCGAAGATAGTAGCCATTACAGGAATATATCAGAAACATGGGGTCTAACAATAGTGGCTGCTGGTAGTGATGGAACTATCAAGACATTCCACAATTTTGGTTTGCCTGTTAGGCTTTAG 1917 0.3798 MLSSDDDGDIDVFYDSLDSLSSQDSVLVELEVGFERLRCDDYDKIWVNEPVSVKERRERFLQGMCLVDTFSKICLQERMVSFDDSSITSGMERITECSGAVSHVCISSSDEVSKKVVFSGWNSASEAEVLFKEIKGRREDEVDASFQEYSQREGEAQEEFRHFDKIRKNWWKCFVNIRKSDEGKVRSKLTTATNKTRRVKVRQNKKRWLEFSELYIGQEIKAHKGLIWTMKFSPNGKYLASGGEDGVVRIWRIMSRDKSPSFIFLQKDIFQIDESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVCCWKIGCDQCLSVFPHKDFVTCIQFNPVDENYFISGSIDGKVRIWGIREERVVDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYVASGKYFKLEAQIGICGKKKTSGNKITSIQFFQNNSQRIMITSEDSKIHILDGIEIVQKYKGLPRSGSQMSGSFTSSGKHIISVGEDSHVYIWNFNDSKTASLKKTKSEHSCEYFSFKGVTVAIPWSGVKAEDRNDNRNNFSHHSSETKTKLEFGCEVRDTEQRFSLGNWFFIDGTCRGSMTWPEEKLPTWDLPLVEDEYDRKTLCREDSSHYRNISETWGLTIVAAGSDGTIKTFHNFGLPVRL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00678 638 Gene3D - 210 516 IPR015943 GO:0005515
Tsu02g00678 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 312 IPR001680 GO:0005515
Tsu02g00678 638 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 259 638 - -
Tsu02g00678 638 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 6 259 - -
Tsu02g00678 638 PANTHER WD REPEAT DOMAIN 44 259 638 IPR040324 -
Tsu02g00678 638 PANTHER WD REPEAT DOMAIN 44 6 259 IPR040324 -
Tsu02g00678 638 Pfam WD domain, G-beta repeat 275 311 IPR001680 GO:0005515
Tsu02g00678 638 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Tsu02g00678 638 Pfam WD domain, G-beta repeat 219 251 IPR001680 GO:0005515
Tsu02g00678 638 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 355 - -
Tsu02g00678 638 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Tsu02g00678 638 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Tsu02g00678 638 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Tsu02g00678 638 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Tsu02g00678 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 362 IPR001680 GO:0005515
Tsu02g00678 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Tsu02g00678 638 SUPERFAMILY WD40 repeat-like 215 490 IPR036322 GO:0005515
Tsu02g00678 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 496 IPR001680 GO:0005515
Tsu02g00678 638 SMART WD40_4 355 394 IPR001680 GO:0005515
Tsu02g00678 638 SMART WD40_4 405 445 IPR001680 GO:0005515
Tsu02g00678 638 SMART WD40_4 314 353 IPR001680 GO:0005515
Tsu02g00678 638 SMART WD40_4 213 252 IPR001680 GO:0005515
Tsu02g00678 638 SMART WD40_4 273 311 IPR001680 GO:0005515
Tsu02g00678 638 SMART WD40_4 446 487 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00678 Tsu-Chr2 5720561 5723827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00678 215 384 Miscellaneous Gene Families AT5G08390 24.713 5.14e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00678 K20241 - gmx:100819135 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00678 02 5720561 5723827 Tsu02g00678 02 5720561 5723827 ECH
Tsu02g00678 02 5720561 5723827 Tsu07g01343 07 11821166 11824653 PCT