Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01241 ATGGCTGAGGAATCTCCAAAATTAACAACTCAAGAGGTAGTGCCTCCTACTGAGGAGCAAAATAAAACAGAATCCACCATTCCCGAGCCCAAGCCCACACCTGAGCCCGAGAAAAAGCCCGTAGAAAATAACACACTAGAGACTGTGACCGAGACCGATGTGTCAAAGCCTGGTGACGATGAAAAAGTTCCTGAATCAGGTTCGTTCAAGGAAGAAAGTACCATTGTTGGTGAGTTACCTGAAGCTGAGAAAAAAGCACTTCAAGAGCTAAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTTTCGGCAGTTACAACTCCCAAACAAGAAAAATCCGAACCAGAACCCGAACCTGAACCAACACCAGAAACAGAAACTCAACCACCTGTTGATGATAACAAGAAAGAAGAACAGAATGAACAAGTTTCTGAAACAGAATCTGTTGTTGCCGTTACTACTGCTGATGATGACGTGtcaccaccacaaccaccaccGGTGACTGAACCTGAGAAactcaaagaagaagaagaaaagaaagaaactgATGTTGCTGCTTCTGTAGATGAAGATGGCGCAAAAACGGTTGAAGCAATTGAAGAAACCGTTGTAGCTGTTTCTTCATCAATTCCAGAGGAACCAAAGGTGGTGGAAGATTCTTCACTtgaacatcatcaacaacaacaaccagaAGAGGTGTCAATTTGGGGAATACCACTCCTATTAGACGAAAGAACTGACGTTATTCTGTTGAAATTTCTCCGAGCAAGAGATTTTAAAGTGAAAGAAGCATTCACAATGATCAAGAATACAATTCAATGGagaaaagagttcaaaattgACGAATTATTATTCGATGAAAATTTAAGCGATGAATATTTAGAGAAAACAGTTTACATGCATGGATATGATAAAGAAGGACATCCTGTTTGTTATAATATTTATGGAGAGTTTGATAACAAAGAAGTTTATAAGAAAACATTTTCTGATGAAGAAAAGAGACAAAAGTTTCTGAGATGGAGAATTCAGTTTTTGGAAAAGAGTATTAGGAAATTGGATTTTAATCCTGGTGGTATATGTACTATTGTTCAGGTTAATGATCTTAAGAATTCTCCTGGTCCTACTAAATGGGAACTTAGACAAGCTACTAAACAAGCTCTTCAATTGCTTCAAGATAATTATCCTGAATTTGTTGCTAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCTGTAAACAGGATGATAAGTCCATTTCTTACACAAAGAACAAAAAGCAAGTTTGTATTTGCTGGACCATCCAAATCAGCTGAAACACTTCTAAGATACATAGCTCCGGAGCAACTTCCGGTAAAATATGGTGGACTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCAGCAAAACACACCGTGGAATTTCCAGTTACTGAGAATTGTCTACTATCATGGGAGCTAAGAGTAATTGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTGCCAAGTTCAGAAGGAAGCTATACTGTGATAATCCAAAAGACTAGAAAAGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTATAAAATTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAATTCAAGTTCTAAGAAGAAGAAGCTCTTGTATCGCTTGAAGACCAAGCCTTCAACTTCTGATTAA 1725 0.3641 MAEESPKLTTQEVVPPTEEQNKTESTIPEPKPTPEPEKKPVENNTLETVTETDVSKPGDDEKVPESGSFKEESTIVGELPEAEKKALQELKQLIQEALNKHEFSAVTTPKQEKSEPEPEPEPTPETETQPPVDDNKKEEQNEQVSETESVVAVTTADDDVSPPQPPPVTEPEKLKEEEEKKETDVAASVDEDGAKTVEAIEETVVAVSSSIPEEPKVVEDSSLEHHQQQQPEEVSIWGIPLLLDERTDVILLKFLRARDFKVKEAFTMIKNTIQWRKEFKIDELLFDENLSDEYLEKTVYMHGYDKEGHPVCYNIYGEFDNKEVYKKTFSDEEKRQKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIIQKTRKVASSEEPVLCNNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPSTSD 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01241 574 PRINTS Cellular retinaldehyde-binding protein signature 250 272 - -
Tsu07g01241 574 PRINTS Cellular retinaldehyde-binding protein signature 415 434 - -
Tsu07g01241 574 Gene3D - 221 472 IPR036865 -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 100 190 - -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 170 190 - -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 10 28 - -
Tsu07g01241 574 SUPERFAMILY CRAL/TRIO N-terminal domain 73 287 IPR036273 -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 53 68 - -
Tsu07g01241 574 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 469 568 IPR036598 -
Tsu07g01241 574 ProSiteProfiles GOLD domain profile. 467 568 IPR009038 -
Tsu07g01241 574 Gene3D GOLD domain 473 568 - -
Tsu07g01241 574 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 287 463 IPR001251 -
Tsu07g01241 574 SMART CRAL_TRIO_N_2 247 272 IPR011074 -
Tsu07g01241 574 SUPERFAMILY CRAL/TRIO domain 297 460 IPR036865 -
Tsu07g01241 574 Pfam CRAL/TRIO domain 298 457 IPR001251 -
Tsu07g01241 574 Pfam CRAL/TRIO, N-terminal domain 227 271 IPR011074 -
Tsu07g01241 574 PANTHER PATELLIN-1 17 574 IPR044834 GO:0008289
Tsu07g01241 574 PANTHER PATELLIN-3 PROTEIN 17 574 - -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 130 144 - -
Tsu07g01241 574 SMART sec14_4 293 460 IPR001251 -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 106 120 - -
Tsu07g01241 574 MobiDBLite consensus disorder prediction 1 81 - -
Tsu07g01241 574 CDD SEC14 295 458 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01241 Tsu-Chr7 10768487 10772642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01241 251 452 Acyl Lipid Metabolism Gene Families AT1G55840 29.439 3.31e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01241 - - gmx:100805585 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01241 07 10768487 10772642 Tsu07g01241 07 10768487 10772642 ECH
Tsu02g00579 02 4888386 4891699 Tsu07g01241 07 10768487 10772642 PCT