Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00579 ATGTCTCATCATCATGACTCTTCTCCAAACCAAACAACACCACATGTAGAGGAACAACTTGTTGTAACCGATGTAAATGTTCCACAACCTCAAAAAACAGCTACTATTCCATTAGAGCCAGAGGAACAAGATCCACACCCTGAACCTcagaacaacaaaaacaacaacccTGTTGTTGAAACTGTCACTCTTCAGACTCATTTCTCCAAACCCGATACCGATTCTGTTAATCATACCTTCAAACAAGAACAAACTACAAAACCTTCTCAATCTGATGATCTTCCTCAAAATGAAAACAAGCCACTTCAAGAGCTTAAAAATCTCATTCAACAAGCACTCAACAACCATGAATTCTCTTCTCCTCCACCCATAAAAGAAGATAAACCACCCACCACCACTACCATAGCTGCTGCACTTGAAAATGCTGCCCCTGCAGAAGAACCTGCACAACCAAAGGTGGAGGAGGAAGTTGCAACCAAGAAAGAGGAACaaaaagaacaagaagaagaagtgaaGGAAACTGTGCAGGTAGCTTCTGTGGATGATGATGGAGCAAAAACTGTGGAAGCTATTGAAGAAAGCGTTGTTAACGTTgtggtttcttcttcctctgtTCCTGCAGAGCAAGAACAACCAGTTGCAGAGAAAGTTGAAGCTTCATTGCCATTACCACCCGAAGAAGTAAACATTTACGGGATACCACTCCTTGCAGATGAAAGAAGTGACGTGATTCTTACGAAATTTCTTCGTGCAAGAGATTTTAAGGCGAAAGAGGCTTTCACAATGATCAAGAACACAATTAACTGGAGAAAAGAATTTGGAATAGAGGAGTTAATGGATGAGAAATTCGgtgatgaatttgaaaaagttgttTACATGCATGGATTTGATAAGGAAGGTCACCCTGTGTGTTATAACATATATGGTGAATTTCAGAACAAGGAATTGTATAAGAAGTGTTTTTCTGATGAGGAGAAGAGACAGAATTTCCTTAGATGGAGAATTCAGTTCCTTGAGAAGAGTATTAGGAATTTGGATTTTAACAATGATGGTATTTGTACTATTGTTCAAGTGAATGATCTTAAGGATTCTCCTGGACCTGCTAAATGGGAACTTAGACAAGCTACAAAACAAGCCCTTCAATTGCTTCAAGACAATTATCCTGAGTTTGTGGCTAAACAGgtGTTCATCAATGTGCCATGGTGGTATTTGGCTGTGAATAGGATGCTAAGTCCTTTCCTTACACAGAGAACCAAAAGCAAGTTTGTTTTTGCTGGGCCTTCCAAATCAACAGAGACTCTTTTGAGCTACATAGCTCCAGAGCAACTCTCTGTGAAGTATGGTGGATTAAGCAAAGATGGTGAATTTGGAAATTCAGATGCTGTTACTGAGATCACAATAAAGCCAGCATCAAAACATACTGTTGAATTTCCTGTTACTGAGAAATGTTTACTGTCATGGGAGGTGAGAGTAATAGGGTGGGAAGTGAGCTATGGTGCAGAATTTGTACCAAGTAATGAAGAAAGTTACACTGTAATTGTTCAAAAGGCTAGAAAAGTGGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAAATAGGTGAACCTGGAAAAGTTGTTCTTACCATTGACAACACAAGTTCTAGGAAGAAAAAGCTCTTGTACCGTTTGAAGACCAAGTCTTCACTCTCTGACTGA 1701 0.3762 MSHHHDSSPNQTTPHVEEQLVVTDVNVPQPQKTATIPLEPEEQDPHPEPQNNKNNNPVVETVTLQTHFSKPDTDSVNHTFKQEQTTKPSQSDDLPQNENKPLQELKNLIQQALNNHEFSSPPPIKEDKPPTTTTIAAALENAAPAEEPAQPKVEEEVATKKEEQKEQEEEVKETVQVASVDDDGAKTVEAIEESVVNVVVSSSSVPAEQEQPVAEKVEASLPLPPEEVNIYGIPLLADERSDVILTKFLRARDFKAKEAFTMIKNTINWRKEFGIEELMDEKFGDEFEKVVYMHGFDKEGHPVCYNIYGEFQNKELYKKCFSDEEKRQNFLRWRIQFLEKSIRNLDFNNDGICTIVQVNDLKDSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMLSPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLSVKYGGLSKDGEFGNSDAVTEITIKPASKHTVEFPVTEKCLLSWEVRVIGWEVSYGAEFVPSNEESYTVIVQKARKVASSEEPVLCNSFKIGEPGKVVLTIDNTSSRKKKLLYRLKTKSSLSD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00579 566 Gene3D - 274 463 IPR036865 -
Tsu02g00579 566 SUPERFAMILY CRAL/TRIO domain 290 452 IPR036865 -
Tsu02g00579 566 Gene3D - 209 272 - -
Tsu02g00579 566 Coils Coil 150 170 - -
Tsu02g00579 566 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 460 559 IPR036598 -
Tsu02g00579 566 Gene3D GOLD domain 464 560 - -
Tsu02g00579 566 MobiDBLite consensus disorder prediction 1 107 - -
Tsu02g00579 566 PANTHER PATELLIN-3 PROTEIN 24 566 - -
Tsu02g00579 566 MobiDBLite consensus disorder prediction 1 33 - -
Tsu02g00579 566 SMART sec14_4 284 452 IPR001251 -
Tsu02g00579 566 CDD SEC14 286 450 IPR001251 -
Tsu02g00579 566 SUPERFAMILY CRAL/TRIO N-terminal domain 92 281 IPR036273 -
Tsu02g00579 566 Pfam CRAL/TRIO domain 289 449 IPR001251 -
Tsu02g00579 566 Pfam CRAL/TRIO, N-terminal domain 239 265 IPR011074 -
Tsu02g00579 566 SMART CRAL_TRIO_N_2 241 266 IPR011074 -
Tsu02g00579 566 MobiDBLite consensus disorder prediction 143 172 - -
Tsu02g00579 566 ProSiteProfiles GOLD domain profile. 459 560 IPR009038 -
Tsu02g00579 566 MobiDBLite consensus disorder prediction 149 172 - -
Tsu02g00579 566 PANTHER PATELLIN-1 24 566 IPR044834 GO:0008289
Tsu02g00579 566 MobiDBLite consensus disorder prediction 49 107 - -
Tsu02g00579 566 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 280 455 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00579 Tsu-Chr2 4888386 4891699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00579 245 429 Acyl Lipid Metabolism Gene Families AT1G55840 25.773 9.39e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00579 - - gmx:100788197 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00579 02 4888386 4891699 Tsu02g00579 02 4888386 4891699 ECH
Tsu02g00579 02 4888386 4891699 Tsu07g01241 07 10768487 10772642 PCT