Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01200 ATGGGTGGAGGAAGTATCAAAAAGAAGAATTTCAAAAGCGTTTCAATAGATCACGTACTTGAAGCTTTAGGtgaaacaaaagaagaaagggATATTCGTATTCGAagtcttttcaatttttttgatgCAGGGAATAATGGGTATTTGGATTATGGTCAGATAGAGAAAGGGTTATCTGCATTGCAAATTCCAGCTGAGTATAAATATGCAAGGGAACTTTTCAAGGTTTGTGATTCTAATAGTGATGGTAGAGTTGAATACAATGAGTTTCGTAGATATATGGATGATAAGGAAATGGAACTTTATTGTATCTTTCAAGCTATTGATGTGGAACATAGTGGTAGTATTGATCCTGAAGAGCTTTGGGATGCACTTGATAGGGCTGGAATTGAAATGGACGAAGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGACAAGGACAATAATGGAACTATCACATTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCACGAAGCAACTATCGAAAATATATATCACCACTGGGAGAGAGTGTACCATGTAGACATTGGAGAGCAAGCTGTCATGCCTGAAGACATTAGCAAGCACACTCACCGCAGCAAATATTTTATCGCTGGAGGAATAGCAGGTGCTACTTCACGTACATTTACTGCTCCTCTTGACCGTCTGAAGGTGGTCTTGCAAGTTCAGACTACACGTTCTTCTGTTCTGTCAGCAGTTACGACGATATGGAAGAAAGATGGTTTAAGCGGGTTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTAGCACCTGAAAGTGCCATAAAATTCTATGCTTTTGAAATGCTGAAAAAGGTAATTGGAGATGCTCAAGGCAACAAGTCCGATATCGGTGCTGCTGGAAGGCTTGTAGCAGGTGGCGTGGCTGGTGGAATTGCGCAGACCGCAATCTATCCATTGGATCTTATCAAAACTAGGTTGCAGACTTCTGCCTCTGAAGGTGGAAGGGCTCCTAAACTTTGGACACTCACAAAGAATATATGGTATCAAGAGGGACCTCGAGCTTTCTACCGAGGGCTTCTTCCATCTGTGATCGGCATGATTCCGTACGCTGGCATTGATCTCGCTTTTTATGATACCTTGAAAGATATGTCcaagaaatatattattcatGATAGTGACCCTGGTCCTCTGGTACAACTAGGATGTGGAACCATTTCTGGAACCCTTGGAGCTACTTGTGTCTATCCACTTCAGGTTATTCGTACTAGGCTGCAGGCACAACCTTCAAACAGTTCCGATGCTTACAAGGGGATGTGTGATGCATTTGTGAGAACTTTTCGACGTGAAGGTTTTATAGGTTTATACAAGGGACTCCTTCCAAATCTACTCAAAGTTGTACCAGCTGCGAGCATTACTTATATGGTCTATGAAAGCATGAAGAAAAGTCTCGATCTAGAGTAG 1452 0.4056 MGGGSIKKKNFKSVSIDHVLEALGETKEERDIRIRSLFNFFDAGNNGYLDYGQIEKGLSALQIPAEYKYARELFKVCDSNSDGRVEYNEFRRYMDDKEMELYCIFQAIDVEHSGSIDPEELWDALDRAGIEMDEEELARFVEHVDKDNNGTITFEEWRDFLLLYPHEATIENIYHHWERVYHVDIGEQAVMPEDISKHTHRSKYFIAGGIAGATSRTFTAPLDRLKVVLQVQTTRSSVLSAVTTIWKKDGLSGFFRGNGLNVVKVAPESAIKFYAFEMLKKVIGDAQGNKSDIGAAGRLVAGGVAGGIAQTAIYPLDLIKTRLQTSASEGGRAPKLWTLTKNIWYQEGPRAFYRGLLPSVIGMIPYAGIDLAFYDTLKDMSKKYIIHDSDPGPLVQLGCGTISGTLGATCVYPLQVIRTRLQAQPSNSSDAYKGMCDAFVRTFRREGFIGLYKGLLPNLLKVVPAASITYMVYESMKKSLDLE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01200 483 Pfam Mitochondrial carrier protein 392 480 IPR018108 -
Tsu07g01200 483 Pfam Mitochondrial carrier protein 292 383 IPR018108 -
Tsu07g01200 483 Pfam Mitochondrial carrier protein 202 284 IPR018108 -
Tsu07g01200 483 ProSiteProfiles EF-hand calcium-binding domain profile. 104 131 IPR002048 GO:0005509
Tsu07g01200 483 SMART efh_1 69 97 IPR002048 GO:0005509
Tsu07g01200 483 SMART efh_1 33 61 IPR002048 GO:0005509
Tsu07g01200 483 SMART efh_1 100 128 IPR002048 GO:0005509
Tsu07g01200 483 SMART efh_1 136 164 IPR002048 GO:0005509
Tsu07g01200 483 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Tsu07g01200 483 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 48 480 - -
Tsu07g01200 483 PRINTS Mitochondrial carrier protein signature 204 217 IPR002067 GO:0055085
Tsu07g01200 483 PRINTS Mitochondrial carrier protein signature 400 422 IPR002067 GO:0055085
Tsu07g01200 483 PRINTS Mitochondrial carrier protein signature 308 326 IPR002067 GO:0055085
Tsu07g01200 483 PRINTS Mitochondrial carrier protein signature 217 231 IPR002067 GO:0055085
Tsu07g01200 483 PRINTS Mitochondrial carrier protein signature 353 371 IPR002067 GO:0055085
Tsu07g01200 483 PRINTS Mitochondrial carrier protein signature 257 277 IPR002067 GO:0055085
Tsu07g01200 483 SUPERFAMILY EF-hand 25 196 IPR011992 -
Tsu07g01200 483 PANTHER SOLUTE CARRIER FAMILY 25 48 480 - -
Tsu07g01200 483 ProSiteProfiles EF-hand calcium-binding domain profile. 29 64 IPR002048 GO:0005509
Tsu07g01200 483 SUPERFAMILY Mitochondrial carrier 198 474 IPR023395 -
Tsu07g01200 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 380 IPR018108 -
Tsu07g01200 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 282 IPR018108 -
Tsu07g01200 483 CDD EFh 100 161 IPR002048 GO:0005509
Tsu07g01200 483 ProSitePatterns EF-hand calcium-binding domain. 145 157 IPR018247 -
Tsu07g01200 483 Gene3D - 112 187 - -
Tsu07g01200 483 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Tsu07g01200 483 ProSiteProfiles EF-hand calcium-binding domain profile. 132 167 IPR002048 GO:0005509
Tsu07g01200 483 Pfam EF-hand domain pair 33 94 IPR002048 GO:0005509
Tsu07g01200 483 Pfam EF-hand domain pair 99 159 IPR002048 GO:0005509
Tsu07g01200 483 Gene3D Mitochondrial carrier domain 195 481 IPR023395 -
Tsu07g01200 483 Gene3D - 4 102 - -
Tsu07g01200 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 391 479 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01200 Tsu-Chr7 10286972 10290672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01200 14 483 EF-hand Containing Proteins AT5G51050 71.822 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01200 K14684 - gmx:100801703 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00563 02 4749450 4753482 Tsu07g01200 07 10286972 10290672 ECH
Tsu07g01200 07 10286972 10290672 Tsu07g01200 07 10286972 10290672 ECH