Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00563 ATGTCTGGAGCCATAGACATGGACCACGTTGGTTTTTCCAAACCCAAATCATCTTCTCCGATCACCGATCACGGTCGTAGTAGTAACAAAACCGCTTCTATTTCAATGGATCATGTTCTTTTGGCTTTACGTGAGACTAAAGAAGAAAGGGATCTTCGTATTAGGAGTTTattcaatttctttgatgcTACTAATAAAGGGTATTTGGATTATGCTCACATTGAAGCTGGTTTATCTGCACTTCAGATACCACCTCAATATAAATATGCTAAAGAACTTTTTAAGGTTTGTGATGCTGATAGAGATGGAAGAATTGATTATCAAGATTTTAGACGTTATATGGATGATAAAGAACTTGAACTTTATAGAATTTTTCAAGCTATTGATGTTGAACATAATGGTTGTATTTTACCTGAAGAACTTTGGGATGCACTTGTCAAGGCTGGGATTGAAATTGACGAGGTGGAACTTGCACGCTTTGTTGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTATCCTCATGAAGCAACCCTTGAAAATATATATCAACATTGGGAGAGGGTGTGCCTTGTAGACATTGGTGAACAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGCACAGGAGCCGGTATTTTATTGCTGGAGGAATAGCAGGAGCTGCTTCTCGCACAGCAACCGCTCCTCTTGATCGTCTAAAGGTGATCTTACAAATTCAGACTGGAAAGGCTTCGATTATGCCAGCAGTGATGAAGATATGGCAACGAGACGGTTTATTAGGGTTTTTCCGAGGTAATGGATTAAACGTTGTGAAGGTTGCACCGGAGAGTGCCATCAAGTTTTATGCTTATGAAATGCTGAAAAATGTAATCGGAGATAGTCAAGGAAACAAGTCAGATATTGGTACCGCTGGGAGACTCTTTGCAGGTGGCATGGCTGGTGCCATTGCGCAGATTGCTATCTATCCATTGGATCTTATCAAAACTAGGTTACAAACTTGTGCTTCTGAAGGTGGAAGGGGTCCTAATCTTGGAACACTTACAAAAGATATATGGGTTCAAGAGGGACCCCGCGCTTTCTATAGAGGGCTTGTTCCATCTCTTCTTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCATATGACACCTTGAAAGATTTATCCAAGAAATATATTGTTTATGACAGTGaaccTGGTCCTCTAGTACAACTCGGATGTGGGACGGTTTCGGGAGCTCTCGGAGCTACTTGTGTCTACCCACTGCAGGTTATCCGTACAAGGCTTCAGGCACAACCTACCAACACTTCTTGTGCTTACAGGGGAATGTCTGATGTTTTTTGGAAAACCCTTAAGGATGAAGGCTTTCGAGGGTTCTACAAGGGACTCATTCCGAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATggtttatgaaaatatgaagaAGAGTTTAGATCTTGATTAG 1512 0.4015 MSGAIDMDHVGFSKPKSSSPITDHGRSSNKTASISMDHVLLALRETKEERDLRIRSLFNFFDATNKGYLDYAHIEAGLSALQIPPQYKYAKELFKVCDADRDGRIDYQDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDEVELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATLENIYQHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVILQIQTGKASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDSQGNKSDIGTAGRLFAGGMAGAIAQIAIYPLDLIKTRLQTCASEGGRGPNLGTLTKDIWVQEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDLSKKYIVYDSEPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQPTNTSCAYRGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKSLDLD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00563 503 MobiDBLite consensus disorder prediction 1 30 - -
Tsu02g00563 503 SMART efh_1 120 148 IPR002048 GO:0005509
Tsu02g00563 503 SMART efh_1 53 81 IPR002048 GO:0005509
Tsu02g00563 503 SMART efh_1 89 117 IPR002048 GO:0005509
Tsu02g00563 503 SMART efh_1 156 184 IPR002048 GO:0005509
Tsu02g00563 503 SUPERFAMILY Mitochondrial carrier 218 495 IPR023395 -
Tsu02g00563 503 Gene3D - 132 207 - -
Tsu02g00563 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 302 IPR018108 -
Tsu02g00563 503 SUPERFAMILY EF-hand 40 218 IPR011992 -
Tsu02g00563 503 Pfam EF hand 92 112 IPR002048 GO:0005509
Tsu02g00563 503 Pfam EF-hand domain pair 120 179 IPR002048 GO:0005509
Tsu02g00563 503 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Tsu02g00563 503 PANTHER SOLUTE CARRIER FAMILY 25 61 501 - -
Tsu02g00563 503 Gene3D - 16 119 - -
Tsu02g00563 503 Gene3D Mitochondrial carrier domain 215 501 IPR023395 -
Tsu02g00563 503 Pfam Mitochondrial carrier protein 412 500 IPR018108 -
Tsu02g00563 503 Pfam Mitochondrial carrier protein 312 403 IPR018108 -
Tsu02g00563 503 Pfam Mitochondrial carrier protein 222 305 IPR018108 -
Tsu02g00563 503 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Tsu02g00563 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 313 400 IPR018108 -
Tsu02g00563 503 MobiDBLite consensus disorder prediction 15 30 - -
Tsu02g00563 503 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Tsu02g00563 503 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 61 501 - -
Tsu02g00563 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 411 499 IPR018108 -
Tsu02g00563 503 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Tsu02g00563 503 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Tsu02g00563 503 PRINTS Mitochondrial carrier protein signature 224 237 IPR002067 GO:0055085
Tsu02g00563 503 PRINTS Mitochondrial carrier protein signature 237 251 IPR002067 GO:0055085
Tsu02g00563 503 PRINTS Mitochondrial carrier protein signature 277 297 IPR002067 GO:0055085
Tsu02g00563 503 PRINTS Mitochondrial carrier protein signature 328 346 IPR002067 GO:0055085
Tsu02g00563 503 PRINTS Mitochondrial carrier protein signature 373 391 IPR002067 GO:0055085
Tsu02g00563 503 PRINTS Mitochondrial carrier protein signature 420 442 IPR002067 GO:0055085
Tsu02g00563 503 ProSiteProfiles EF-hand calcium-binding domain profile. 121 151 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00563 Tsu-Chr2 4749450 4753482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00563 7 503 EF-hand Containing Proteins AT5G51050 74.349 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00563 K14684 - gmx:100791305 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00563 02 4749450 4753482 Tsu07g01200 07 10286972 10290672 ECH
Tsu02g00563 02 4749450 4753482 Tsu02g00563 02 4749450 4753482 ECH