Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00680 ATGTCTTTATTTTCTACTCTCCATCGATCCTCCTTCATTCAACGCTTCCGAACTTCGGCCACACAATCTTCTTCCTTTGCACCATCGTTACCAAATACCAACCCACCTCGATATCCAAAGTTGGTTTCGGCCGTTGTTCTTGGTTCTGCTCTTGCTCTTTTGTATTACGTCTCCAAAAATAATTCACACTTTGACTCCGCTTTCTTAAACAACGCCTTTAGAAAATTATCACTTCCTGAGAGTACCAACAATAACCTACTTTTTGGAGGCAAAAGTAAGGTTTTCTTCAACTATGAGAAGCGAATACGGTTGCATAGTCCACCTGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACATCAGAACCTCTTATGACTCCGGCAGATTTAATGCGCGCAGTAGTTCCTGTTTTCCCTCCATCTGAATCAAACCTTATTAGAGAAGGACACTTGAAAGGCGAAAGAAGTCCTGGCCACTTGTTCTGTCCTCCTTCagatttttttatgcttttcgATGTAAATGGTGACGGCCTTATATCTTTCAGAGAGTATCTATTCTTGGTAACACTGCTTAGCATTCCAGAATCAAGTTTTTCTGCAGTGTTTAAAATGTTTGACATGGATAATGACGGGGAGATAGATAAAGAAGAATTCAAAAGAGTGGTGACATCAATTCGATCTCATAGCAGGCACAGTGTTCGCCGAAGGGATGAACGACTGACGGATGCTTCAATAGAAAATGGAAGGATGGTGGAATATTTATTTGGTAAAGACGGAAAAGGACGGCTCAAACATGATAAATTTGTTAAGTTTATAAGTGATTTGCATGATGAAATTTTGAGGCTGGAGTTTGTTCATTATGACTTCAAATctcaaaaaaccatatcagcCAAGGATTTTGCACACTCCATAGTTGCTTCTGCAGATGTGAGTCATCTGAACAAGTTACTTGAAAGGGTTGATGAAATGAACGATGATGCACGGTTCAATAACGTACGCATCACAATTGAGGAGTTCAAGAATTTTGCCGAACTGCGAAAAAAATTAGTACCACTTTCATTGGCTCTTTTCAGCTTTGCAAAAGTAAATGGccttttaacaagagatgattTTCAACGAGCTGCATCAAGTGTTTGTGGTTTATCTCTCTCTAACAATGTGGTGAAGATTGTGTTCCATTTGTTTGACACAAATGGGGATGGAAATCTCTGTTCAAATGAGTTTGTTAGAGTGCTACACAGGCGAGAGAGAGATGTTGGTCGAACTGTGGAGACAGGAATCACCGGTTTCTTGTCATGCTGCTGGAGTTGTACAGACACATCTCCATATTCACAGTTGTTTTCCTGA 1347 0.3853 MSLFSTLHRSSFIQRFRTSATQSSSFAPSLPNTNPPRYPKLVSAVVLGSALALLYYVSKNNSHFDSAFLNNAFRKLSLPESTNNNLLFGGKSKVFFNYEKRIRLHSPPEKVFEYFASCRTSEPLMTPADLMRAVVPVFPPSESNLIREGHLKGERSPGHLFCPPSDFFMLFDVNGDGLISFREYLFLVTLLSIPESSFSAVFKMFDMDNDGEIDKEEFKRVVTSIRSHSRHSVRRRDERLTDASIENGRMVEYLFGKDGKGRLKHDKFVKFISDLHDEILRLEFVHYDFKSQKTISAKDFAHSIVASADVSHLNKLLERVDEMNDDARFNNVRITIEEFKNFAELRKKLVPLSLALFSFAKVNGLLTRDDFQRAASSVCGLSLSNNVVKIVFHLFDTNGDGNLCSNEFVRVLHRRERDVGRTVETGITGFLSCCWSCTDTSPYSQLFS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00680 448 Pfam EF hand 166 184 IPR002048 GO:0005509
Tsu07g00680 448 Pfam EF hand 200 222 IPR002048 GO:0005509
Tsu07g00680 448 SUPERFAMILY EF-hand 166 273 IPR011992 -
Tsu07g00680 448 CDD EFh 168 223 IPR002048 GO:0005509
Tsu07g00680 448 Gene3D - 274 425 - -
Tsu07g00680 448 Gene3D - 106 273 - -
Tsu07g00680 448 ProSiteProfiles EF-hand calcium-binding domain profile. 193 228 IPR002048 GO:0005509
Tsu07g00680 448 SUPERFAMILY EF-hand 279 414 IPR011992 -
Tsu07g00680 448 SMART efh_1 387 415 IPR002048 GO:0005509
Tsu07g00680 448 SMART efh_1 197 225 IPR002048 GO:0005509
Tsu07g00680 448 SMART efh_1 163 191 IPR002048 GO:0005509
Tsu07g00680 448 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Tsu07g00680 448 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 448 IPR039800 GO:0005509|GO:0006851
Tsu07g00680 448 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
Tsu07g00680 448 CDD EFh_MICU 198 415 - -
Tsu07g00680 448 Pfam EF-hand domain pair 364 414 IPR002048 GO:0005509
Tsu07g00680 448 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Tsu07g00680 448 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00680 Tsu-Chr7 5432185 5434733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00680 75 385 EF-hand Containing Proteins AT4G32060 61.755 1.10e-133 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00680 K22827 - gmx:100786375 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00669 01 5924834 5930963 Tsu07g00680 07 5432185 5434733 PCT