Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00669 ATGTCTATCTTTTCCACTCTCAGAAAATCAATCTCACCCATCACCCGCCATTTTTCAATCCAACAGCTCCAAATCCTCCACCCTTCAACCTCACCATCATCGCCGTCGACACTGATCTCTCGCAACACTGTTCTCGCCACCATCGTAGCAGGCACGAGTCTAGGGTTTCTTCTCTACACCACCGACTTTGATTCAACTCCTTTTCAATCTTCAATCTCTTCTTTCGTTGACCATTGGTCAACACCTAATTCCGAAGACCAAAATCAACGTCGTTTTTCACCTTCCTCATTCTTTACCAAATTGTCCCTACCTGAAACTTCTAGTACCTTCCTTTTTGGAGAAGCATATAGGAGAAAAGTTTTCTTCAACTATGagaagcgaattcggttgcgaAGTCCTCCTGAAAAGGTTTTTGAATACTTTGCATCTTATCGATCACCAGAAGGAGAAGTACTCATGATACCTGCAGACCTAATGAGAGCTGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGATGGATACTTGAGAGGAGAAAGAAACCCTGGCCATTTACGCTGCTCTCCTTCAgaattttttatgctttttgaTGTTAACAGTGACGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACATTACTCAGCATCCCAGAATCAAGCTTTTCTGTGGCATTTAAAATGTTTGACGTGGACAATAATGGGGAGATAACCAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAACACAGGGACGGACTGCGAATTGGTCTAAAGGTGAATGATTCTGTGGAAAATGGAGGGCTGTTGGAATACTTTTTTGGTAAAGATGGAAAAAGTTCCCTCCAACTTGATAACTTCGTACAATTTTTGCGAGACTTGAATGATGAAATTTTGAGGCTGGAGTTTGCTCATTATGACTACAAATCTCGAAAAACAATTTCAGCCAAGGACTTTGCTCTCTCCATGGTTGCTTCTGCCGACATGAGTCATCTAGGCAAGTTGCTTGAACGGGTTGATGAATTGAGTAATGATCCATGCTTTAAGGATGTGCGCATCACTTTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGCTATTTCCCTTGTCATTAGCCCTTTTCACTTTTGGaaaagtaaatggtctgttgACGAGAGATGATTTTCAGCGAGCAGCATCACATGTTTGTGGCATATCTCTCTCGGACAACGTGGTTGatattgtttttcatttgtttgataCAAATCAAGATGGAAACCTAAGTACAGATGAGTTTGTAAGAGTGCTACACAAGCGAGAAAGGGACATCGGACATCCTGTGGAGACAGGAATGTTGAGTTTGTTGTCTTGCTGCTGGAACTGTAAAGAAAACATCTCATCTTCACGGTTGTTTTCCTCATAG 1446 0.3956 MSIFSTLRKSISPITRHFSIQQLQILHPSTSPSSPSTLISRNTVLATIVAGTSLGFLLYTTDFDSTPFQSSISSFVDHWSTPNSEDQNQRRFSPSSFFTKLSLPETSSTFLFGEAYRRKVFFNYEKRIRLRSPPEKVFEYFASYRSPEGEVLMIPADLMRAVVPVFPPSESHLVRDGYLRGERNPGHLRCSPSEFFMLFDVNSDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEITKEEFKKVMALMRSHHRQGVQHRDGLRIGLKVNDSVENGGLLEYFFGKDGKSSLQLDNFVQFLRDLNDEILRLEFAHYDYKSRKTISAKDFALSMVASADMSHLGKLLERVDELSNDPCFKDVRITFEDFKNFAELRKKLFPLSLALFTFGKVNGLLTRDDFQRAASHVCGISLSDNVVDIVFHLFDTNQDGNLSTDEFVRVLHKRERDIGHPVETGMLSLLSCCWNCKENISSSRLFSS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00669 481 SMART efh_1 419 447 IPR002048 GO:0005509
Tsu01g00669 481 SMART efh_1 225 253 IPR002048 GO:0005509
Tsu01g00669 481 SMART efh_1 191 219 IPR002048 GO:0005509
Tsu01g00669 481 Pfam EF hand 195 212 IPR002048 GO:0005509
Tsu01g00669 481 SUPERFAMILY EF-hand 312 447 IPR011992 -
Tsu01g00669 481 ProSiteProfiles EF-hand calcium-binding domain profile. 221 256 IPR002048 GO:0005509
Tsu01g00669 481 Gene3D - 171 258 - -
Tsu01g00669 481 Pfam EF hand 229 252 IPR002048 GO:0005509
Tsu01g00669 481 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 480 IPR039800 GO:0005509|GO:0006851
Tsu01g00669 481 ProSitePatterns EF-hand calcium-binding domain. 234 246 IPR018247 -
Tsu01g00669 481 Gene3D - 316 454 - -
Tsu01g00669 481 CDD EFh_MICU 226 447 - -
Tsu01g00669 481 SUPERFAMILY EF-hand 194 446 IPR011992 -
Tsu01g00669 481 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Tsu01g00669 481 CDD EFh 194 251 IPR002048 GO:0005509
Tsu01g00669 481 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Tsu01g00669 481 Pfam EF-hand domain pair 396 445 IPR002048 GO:0005509
Tsu01g00669 481 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00669 Tsu-Chr1 5924834 5930963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00669 45 412 EF-hand Containing Proteins AT4G32060 67.204 9.45e-176 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00669 K22827 - gmx:100806575 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00669 01 5924834 5930963 Tsu07g00680 07 5432185 5434733 PCT