Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00652 ATGTCTAAAGTTTTCAGCTTTACTGGAAGTGATGATTTTTTTACTGGAAGATCATTATACCCTAATCCAAAGGAGGCGGGTCTCTTCTTGTCTCTTGGCCTTCAAGAGTATGCTTACAAACCTCTTCAGAAGAGACCTCGTGTTAGCGTTCCATTTGATTTCAGTGGAGAAAAATTGTTTGATCAGAAGCAGCCAGAGACATCTATCGAAACATTGCCTGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGAAGGCCAGGACAGGAGTTTATGTGCTTCTGTATCAAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGCAAGAATGAAATCTGCAGCAACGCAAGTACCAAAAATGGAAACGACGATAGTGATGAAGGGTATCTTTCTCGAAGCTTGGATGGAAAGGAGGCAACAGATGTTAGACTAGCTGCCATTGCTGTTGGTACAGCATCTCGTGGAGGATTAGGGAAGCTTTCGATTCTTAGATCCAATTCAGATCGTCCGTTGACTGATGTAGGTCTCAAGGCAGTTGGTCGTGGCTGCCCTTCTCTAAAGTTTCTCAGTATTTGGGATGTTGCTACAATTAGTGACGATGGCCTCGTTGCGATTGCTAATGGTTGTCACCAGCTAGAGAAGCTCGACCTTTGCAAGATGCCCACAATTTCTGACAAGGCTTTAATTGCAGTTGCAAAGAACTGCCCGAAGCTAAACTGGTTATCGATTGAGTCATGTCCTAATATCGGTAATGAAGGTCTGAAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCCGTATCAATTAAAAATTGTCCTGGAGTTGGTGATCAGGGAATTGCTGGCATGGTATCTGCAGCATCCTTTGTTCTAACAAATGTGACACTTGAATCGCTTGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGACTTGTGGTTACCAATCTCGTCCTAAATTCCCTTGCAAATGTCACCGAGAGGGGATTCTGGGTGATGGCTAATGGCCATGCACTGCAGAAACTGACGTCGCTCACAATTGGGTCGTGCCCAGGAGTAACAGATGTTGGGCTTGAAGCTATAGGAAAAGGTTGTCCAAATGTGAAAAACTTTGAGCTTCGTAAGTGTCCATTTCTGTCAGATAATGGGTTGGTATCGTTCACCAAGGCTGCTCCATCAATTGAGAGCCTACAATTGGAAGAGTGCCACAGGGTTACCCAACTCGGACTTGTTGGTGTCCTTTTTTATTGCAGTGCAAAATTGAAGGCTCTTACTCTGGTACGCTGCTACGGCATCAAAGATATGAATCTTGTCTTGCCAGCAGTATCTCCTTGTGAATCAGTTTCGTCCTTATCAATCCTTAACTGCCCTGGAGTTGGTAATTCTACTCTTGCTGTCGTTGGGAAGCTCTGTCCTTTGCTTCAAAAACTTGAATTGGTTGGACTTGAAGGAGTAACAGACACGGGGTTTCTTTCTCTGCTTGAGGGGTCTAAGGCCAGTTTGACTAATGTTAATCTACGTGGTTGCATTAATCTGACAGATGCAGGAGTTTTGTCCATGATCAAGTTGCATGGTTCGACTCTTGATGAGCTAAACCTCAACTGTTGTAAAAAAGTCAGCGATGCTAGCTTGACAGCAATTGCAGGAAACTGCCCAGTGCTCACTGATCTTGATGTTTCCCGGTGCGCAATCACTGATGCAGGGATTACTGCCATTGCTCATGGAGTCCAGCTCAATTTGGAGGTGCTTTGTTTGGCAGGTTGCAATTCGGTTACAAACAAGAGCTTGCAAGCTTTGAAAAAAATGGGCGATTCCCTCCAgggattaaatataaaaaattgcaaatcaCTCAGCAGTCGCACAGTTGACAAGCTTATCGATCATCTCTGGATGTGTAACATCCTCTTCTGA 1917 0.4371 MSKVFSFTGSDDFFTGRSLYPNPKEAGLFLSLGLQEYAYKPLQKRPRVSVPFDFSGEKLFDQKQPETSIETLPDECLFEILRRLPEGQDRSLCASVSKRWLMLLSSICKNEICSNASTKNGNDDSDEGYLSRSLDGKEATDVRLAAIAVGTASRGGLGKLSILRSNSDRPLTDVGLKAVGRGCPSLKFLSIWDVATISDDGLVAIANGCHQLEKLDLCKMPTISDKALIAVAKNCPKLNWLSIESCPNIGNEGLKAIGKLCPNLRSVSIKNCPGVGDQGIAGMVSAASFVLTNVTLESLAVSDYSLAVIGQYGLVVTNLVLNSLANVTERGFWVMANGHALQKLTSLTIGSCPGVTDVGLEAIGKGCPNVKNFELRKCPFLSDNGLVSFTKAAPSIESLQLEECHRVTQLGLVGVLFYCSAKLKALTLVRCYGIKDMNLVLPAVSPCESVSSLSILNCPGVGNSTLAVVGKLCPLLQKLELVGLEGVTDTGFLSLLEGSKASLTNVNLRGCINLTDAGVLSMIKLHGSTLDELNLNCCKKVSDASLTAIAGNCPVLTDLDVSRCAITDAGITAIAHGVQLNLEVLCLAGCNSVTNKSLQALKKMGDSLQGLNIKNCKSLSSRTVDKLIDHLWMCNILF 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00652 638 SUPERFAMILY F-box domain 64 109 IPR036047 GO:0005515
Tsu07g00652 638 Gene3D Ribonuclease Inhibitor 287 439 IPR032675 -
Tsu07g00652 638 Gene3D Ribonuclease Inhibitor 62 286 IPR032675 -
Tsu07g00652 638 Gene3D Ribonuclease Inhibitor 440 574 IPR032675 -
Tsu07g00652 638 SUPERFAMILY RNI-like 169 287 - -
Tsu07g00652 638 PANTHER UNCHARACTERIZED 16 629 - -
Tsu07g00652 638 SUPERFAMILY RNI-like 326 635 - -
Tsu07g00652 638 SMART fbox_2 72 113 IPR001810 GO:0005515
Tsu07g00652 638 Pfam Leucine Rich repeat 235 257 IPR001611 GO:0005515
Tsu07g00652 638 Pfam Leucine Rich repeat 342 363 IPR001611 GO:0005515
Tsu07g00652 638 Pfam Leucine Rich repeat 553 575 IPR001611 GO:0005515
Tsu07g00652 638 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 629 - -
Tsu07g00652 638 Pfam F-box domain 72 108 IPR001810 GO:0005515
Tsu07g00652 638 SMART LRR_CC_2 579 604 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 209 234 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 393 418 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 473 498 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 367 392 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 553 577 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 341 366 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 527 552 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 183 208 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 235 260 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 447 472 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 261 286 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 500 525 IPR006553 -
Tsu07g00652 638 SMART LRR_CC_2 605 630 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00652 Tsu-Chr7 5175872 5179839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00652 K14515 - gmx:100805418 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00652 07 5175872 5179839 Tsu07g00652 07 5175872 5179839 ECH
Tsu01g00692 01 6088491 6092062 Tsu07g00652 07 5175872 5179839 PCT