Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00692 ATGTCTCAAGTCTTCGGCTTTTCTGGTGATAACTTTTACCAAGGGGGTTCAATATACACAAACCCCAAGGAAGCTAGTTTCTTCCTGTCTCTTGGCCACCAAGCTGATGTCTTCTATCCTCCTCAGAAGAGATCGCGCGTCAGTGTTCCATTTGTTTTTGATGGAGAATGGTTTGAGCAGAAGCAGAAAACCTCTATTGAATCTTTGCCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCTGCAGGTGAAGAAAGAAGTGCATGCGCTTGTGTTTCCAAACGCTGGCTTATGCTTCTAAGCAATATTTGCAAGAGTGAAATCTGTAGCAACAAAAACACCAGCTCAGGTGGTGAGAATAAAATGGAAAGTGACAGTGAAGAGTTTGGAGGTGAGGGATATCTTTCCCGGAGCTTAGAAGGAAAGAAGGCAACCGATGTTAGACTTGCTGCTATTGCAGTTGGAACCGCATCACGAGGAGGATTGGGAAAGCTTTCAATCCGTGGAAGCAACTCAGTTCGTGGGGTGACTACAACAGGTCTCAAAGCAGTTGCTAGTGGATGCCCTTCTCTAAAGGCTCTTTCTCTATGGAATGTTTCTTCTGTTGGTGATGAAGGCATAATCGAGATTGCTAATGGATGTCAACAGCTAGAGAAGCTTGACCTCTGCAAATGCCCTGCAATCTCTGACAAGGCTTTAATCGCAGTTGCAAAGAAGTGTCCAAATCTGACCGAGTTATCATTAGAGTCTTGTCCTAGCATTTGCAACGAAGGTCTACAAGCTATTGGAAAGTTCTGCCCCAATCTGAAATCTATATCTATCAAGGATTGTGCCGGAGTTGGTGATCAGGGAATTGCTGGGGTGTTTTCTTCAGCTTCTTTGGTTCTGACAAAGGTGAAGCTCCAGGCTCTGACTGTTTCAGATCTCTCTTTGGCTGTTATTGGACATTATGGAAAATCAGTTACCGATCTTGTCCTTAATTTCCTTCCAAATGTTAGTGAAAGGGGCTTCTGGGTTATGGCCAATGCTAATGGATTGCATAAACTGAAGTCACTCACAATTGCATCCTGCAGAGGAGTAACAGATGTTGGACTAGCAGCTGTTGGAAAGGGCTGCCCTAATCTGAAAAGCGTACACCTTAATAAGTGTGCGTTTCTCTCAGACAATGGATTGATTTCATTCTCCAAGGCAGCTATATCACTTGAAAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAATTCGGATTTTTCGGTGTCCTTTTTAACTGTGGCGCAAAATTGAAGGCTCTTTCACTTGTAAGCTGCTACGGGATCAAAGACTTGGACTTGGAATTGTCTCCAGTAGCTCCTTGTGAATCACTCCGTTCGTTATCGATCTGTAACTGCCCTGGATTTGGCAACGCTACCCTTTCTGTACTTGGAAAGTTGTGCCCTCAGCTTCAACAGGTTGAATTGACTGGACTTAAGGGAGTGACAGATGCTGGTTTGCTTCCACTGCTTGAGAGTTCCGAGGCTGGTCTCGTTAAAGTTAATCTTAATGGTTGTATCAATCTTACCGACAAAGTAGTTTCATCCCTGGTCAATCTGCATGGTTGGACTCTTGAGGTTCTAAACCTCGAAGgttgtaaaaatatcagcaaCGCTAGCTTGGCAGCAATTGCTGAACATTGCCAACTGCTTTGTGATCTTGATGTTTCCATGTCTACAATCTCTGATGCTGGGATGGCAGCCCTGGCACATGCCAAACAGTTAAATCTACAGATCCTTTCTCTGTCAGGCTGCACTTTGGTTACGGACAGGAGTTTGCCCGCTTTGAGGAAATTGGGCCACACCCTTTTGGGACTAAATATCCAGCATTGCAATTCGATCAGCAGCAGCGCGGTTGAAATGCTTGTTGAACATCTTTGGAGGTGTGACATCCTCTCATGA 1935 0.4434 MSQVFGFSGDNFYQGGSIYTNPKEASFFLSLGHQADVFYPPQKRSRVSVPFVFDGEWFEQKQKTSIESLPDECLFEIFRRLPAGEERSACACVSKRWLMLLSNICKSEICSNKNTSSGGENKMESDSEEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNSVRGVTTTGLKAVASGCPSLKALSLWNVSSVGDEGIIEIANGCQQLEKLDLCKCPAISDKALIAVAKKCPNLTELSLESCPSICNEGLQAIGKFCPNLKSISIKDCAGVGDQGIAGVFSSASLVLTKVKLQALTVSDLSLAVIGHYGKSVTDLVLNFLPNVSERGFWVMANANGLHKLKSLTIASCRGVTDVGLAAVGKGCPNLKSVHLNKCAFLSDNGLISFSKAAISLESLQLEECHRITQFGFFGVLFNCGAKLKALSLVSCYGIKDLDLELSPVAPCESLRSLSICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDAGLLPLLESSEAGLVKVNLNGCINLTDKVVSSLVNLHGWTLEVLNLEGCKNISNASLAAIAEHCQLLCDLDVSMSTISDAGMAALAHAKQLNLQILSLSGCTLVTDRSLPALRKLGHTLLGLNIQHCNSISSSAVEMLVEHLWRCDILS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00692 644 SUPERFAMILY RNI-like 171 641 - -
Tsu01g00692 644 Pfam Leucine Rich repeat 373 396 IPR001611 GO:0005515
Tsu01g00692 644 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Tsu01g00692 644 PANTHER UNCHARACTERIZED 16 635 - -
Tsu01g00692 644 Pfam F-box domain 67 104 IPR001810 GO:0005515
Tsu01g00692 644 SUPERFAMILY F-box domain 62 103 IPR036047 GO:0005515
Tsu01g00692 644 PANTHER EIN3-BINDING F-BOX PROTEIN 1 16 635 - -
Tsu01g00692 644 Gene3D Ribonuclease Inhibitor 148 238 IPR032675 -
Tsu01g00692 644 Gene3D Ribonuclease Inhibitor 505 566 IPR032675 -
Tsu01g00692 644 Gene3D Ribonuclease Inhibitor 567 643 IPR032675 -
Tsu01g00692 644 Gene3D Ribonuclease Inhibitor 445 504 IPR032675 -
Tsu01g00692 644 SMART LRR_CC_2 559 583 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 215 240 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 506 531 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 241 266 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 267 292 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 373 398 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 399 424 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 533 558 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 479 504 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 189 214 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 347 372 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 453 478 IPR006553 -
Tsu01g00692 644 SMART LRR_CC_2 585 610 IPR006553 -
Tsu01g00692 644 Gene3D - 59 108 - -
Tsu01g00692 644 SMART fbox_2 69 110 IPR001810 GO:0005515
Tsu01g00692 644 Gene3D Ribonuclease Inhibitor 239 444 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00692 Tsu-Chr1 6088491 6092062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00692 K14515 - gmx:100820247 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00692 01 6088491 6092062 Tsu01g00692 01 6088491 6092062 ECH
Tsu01g00692 01 6088491 6092062 Tsu07g00652 07 5175872 5179839 PCT