Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00560 ATGAGTAGACCAACAACCCGgagtaaaaataaaagacaaaaacaagGGGATGAAGGTGTTTGTTCTAATGAAATATGGAGGAGAATTCACGAAACAGGTGTGGTGACCGGGGATGATATTAATCAATTGTATATGATTTGGAAACCGGTTTGTTCAGGCTGCCGTGTGAATACGAAAGATAATCCGAATTGCTTTTGTGCATTGGTTCCACCTCCAAATGGAGTTAGAAAGTCTGGCTTATGGGAGAAGATGTCAGATTTTGTTGAAAGTCTTGGCCCTGATCCAAACAAAGATCTTCGTGCTTCTGCCGATTCTCCTGCAGGTTTAACAAATCTTGGGGCAACATGTTATGCAAATGGAATACTTCAATGCTTGTACATGAACAAGTTATTCCGAGAAGGCATATTTTCTGCAGAACCAGATGTTTTAAGGCAACAGCCTGTATTAGATCAACTAGCTAAACTTTTTGCGCAGTTGCAAGCTAGTAAATTGGCTTTCATAGATTCTTCTCCATTTGTGAAAACACTGGAGTTAGATAATGGTGTTCAGCAGGATAGCCATGAATTCTTGACATTGCTTCTGTCATTGCTTGAGCGTTGTCTGAGTCATTCCAAAGTTTCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGTGGAAGTGTGTCTCACGTGACAACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAACGGAAGATTTCTATGAATTGGAGTTAAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCCTAGATGATTACCTAACTGTTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGAGTCATGCAACACGAGAGTTGATGCTACTCGCAGCATCAAGTTGTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGTTGTGTTTTTCTTCCAAAGACCACtacaaagaagaaaattacCTCTGCATTTTCATTTCCTGCACAACTTGATATGCGGCATAGATTGTCTGAGTTGTCTCAGTTTGATTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGATCTGGTGTTAATAGCGGCCATTACATCGCTCACATCAAGGACAAAAACACGGGGCAGTGGTGGGAATTTGATGATGAACATGTTACTAATTTGGGTAACCATCCATTTGGTGAAGGACCTTCTAGTTCTACTATTAAATCCATTGCAACTGATGCAATTCCATCTGAAGTAAGGATAGCTGAAAGTAATGGAAACAAAACTCATTCACAATCTTCCCTTATGGAGATATTTTCTTCGTGTGATGCATACATGTTGATGTACCATCTTAAGCATGgaaaaaatataagtgaaaatgGGGGCATAGCTTGTGGTGCTAACCATAAAGAAATAGAGGGTGTTGTAGCTACTGCACGAGATGGtacttctcttccttctcaTCTTTATGGTGAGATTCACAATTTCAACGCCTCATATCTTGATGCTTGTCAACAATACAGTCATAGGAAAGAGTTAGAATTGAGTCGTATTACTGATAGGAGAAAGGAAGTTCGATCTGTTTTAGCTGAAGCTTCTGTTCCACCATTGGAGCGACCATTCTATTGGATTTCTAGTGACTGGCTTCGTCAGTGGGCTGACAACATTATTCCAACTTCGATCAACAACACAATCATCCAATGTGCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATAAAGCGACTGTCTGCCAAAGCTTGGGATAAGTTGTTTTCCAAGTATGGTGGGATGCCAACACTATCTCATGATGACCATTGCCGGGATTGTCTGATACACGGGGCTCAGACAGTAGTATCAGCTGACACCTATCGGGGTAGAAGAGAATCATTGAAGCCACTTGCACGTGATATTCTTGACGGGAACTGTCTAGATGGAAAGTATTTCATATCCAGACCATGGTTGCTGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGATGCTGATGCTGGACTAACAGCAGCAATTAGTTGTCCACACGGTCTATTGATGCCTGAACAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGTCTTTTTGGCTCTTCTTATATGAAGATGCTATTTATGTAAAACCCAATGATCCTTTAGGTGGCCCAACTCTTCCTTCAAGTTCCATAGAGTGTTCCCAATGCATTAATGAATTGTCTGAAGCAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAGCAGCGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTATGCCACTATCTGTAGATTGCAAATATTTCTTGCTGCCTTCTTCATGGATATTAAAATGGAGAAATTACATTAGTCCAACATTCAAGAATCCAGATAAACCGGAAAATTTAGATGGGGTAATTGATTCACTGATGTGTGAAAAGCACTCACAACTTGTTGGAAGACCTCCTCAACTGGTTTTCAGACGCGGTGCTATAAACCAGAGAGAATCTTCTGCAGGTGGTTTAACTATCATATCTGAGAATGATTGGGTATGCTTTTGTGAAGAATGGGGCGGTACTGTGAAAAAAGGGATATCTGCAACAATTTATCAAATTAATGATTTAGATAACTTTTTGACTGGATCCGATGACAAGATGCTGATATGTGAGGATCAGTTACACGTGGGGGATAAAATGAATAATGAAAATGGAACTGGACAAATTTTGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGTGACTTAATGCATAAACTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTACGTGGTAAGGAGGTACCTAAATCAATCTTGGAGGCCTCAAAGGGATTAATTGAAACAGATCGGCGGGTTTCCAAGCGCTCCCGGAAGACTAAAAATGGGAGTTCAGTTAGTTTAAAAGTTTCTGCTTCAACATCACTATACCAGTTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTGCATAAAGGTGATAGAATAATTGACAATGATGATGAAAGTGCTACCCTTGCGGATGCAAACATATTTGCCGGAGATCAAATTATAGTGAGGGATTCTGAGATCCATGAAAATCGAGACATTGCCGACGAACTCTGCTGTGATAAGATGGATCTGCAGCATACTGAGGAAGGTTTCCGTGGAACACTTCTTACAACAAACATTTCATCCCAGGTTGTTTAA 3234 0.3946 MSRPTTRSKNKRQKQGDEGVCSNEIWRRIHETGVVTGDDINQLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGVRKSGLWEKMSDFVESLGPDPNKDLRASADSPAGLTNLGATCYANGILQCLYMNKLFREGIFSAEPDVLRQQPVLDQLAKLFAQLQASKLAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVSKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKTEDFYELELNVKGLKSLDESLDDYLTVEELHGDNQYFCESCNTRVDATRSIKLCTLPDVLNFQLKRCVFLPKTTTKKKITSAFSFPAQLDMRHRLSELSQFDLVYDLSAVLIHKGSGVNSGHYIAHIKDKNTGQWWEFDDEHVTNLGNHPFGEGPSSSTIKSIATDAIPSEVRIAESNGNKTHSQSSLMEIFSSCDAYMLMYHLKHGKNISENGGIACGANHKEIEGVVATARDGTSLPSHLYGEIHNFNASYLDACQQYSHRKELELSRITDRRKEVRSVLAEASVPPLERPFYWISSDWLRQWADNIIPTSINNTIIQCAHGKVPVSKVTSIKRLSAKAWDKLFSKYGGMPTLSHDDHCRDCLIHGAQTVVSADTYRGRRESLKPLARDILDGNCLDGKYFISRPWLLQWWKRKVLDAPSDADAGLTAAISCPHGLLMPEQAPGAKRVLIPESFWLFLYEDAIYVKPNDPLGGPTLPSSSIECSQCINELSEAACLEDSLRLVKQKQRQNHEKLFQAKSMPLSVDCKYFLLPSSWILKWRNYISPTFKNPDKPENLDGVIDSLMCEKHSQLVGRPPQLVFRRGAINQRESSAGGLTIISENDWVCFCEEWGGTVKKGISATIYQINDLDNFLTGSDDKMLICEDQLHVGDKMNNENGTGQILIKTCPEVCESCIGEKESCDLMHKLNYCNEDICVILVRGKEVPKSILEASKGLIETDRRVSKRSRKTKNGSSVSLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDNDDESATLADANIFAGDQIIVRDSEIHENRDIADELCCDKMDLQHTEEGFRGTLLTTNISSQVV 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00560 1077 SUPERFAMILY Cysteine proteinases 106 444 IPR038765 -
Tsu07g00560 1077 Gene3D - 739 857 IPR035927 -
Tsu07g00560 1077 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 444 IPR028889 -
Tsu07g00560 1077 Gene3D Cysteine proteinases 93 444 - -
Tsu07g00560 1077 ProSiteProfiles DUSP domain profile. 743 867 IPR006615 GO:0004843
Tsu07g00560 1077 CDD Ubl_USP48 967 1068 IPR044743 GO:0004197|GO:0004843|GO:0016579
Tsu07g00560 1077 ProSiteProfiles DUSP domain profile. 615 722 IPR006615 GO:0004843
Tsu07g00560 1077 CDD Peptidase_C19L 108 441 IPR033841 GO:0004843
Tsu07g00560 1077 SMART dusp 526 602 IPR006615 GO:0004843
Tsu07g00560 1077 Pfam Ubiquitin carboxyl-terminal hydrolase 108 441 IPR001394 GO:0004843|GO:0016579
Tsu07g00560 1077 ProSiteProfiles Ubiquitin domain profile. 968 1034 IPR000626 GO:0005515
Tsu07g00560 1077 Gene3D - 966 1037 - -
Tsu07g00560 1077 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Tsu07g00560 1077 SUPERFAMILY Ubiquitin-like 968 1035 IPR029071 -
Tsu07g00560 1077 ProSiteProfiles DUSP domain profile. 508 600 IPR006615 GO:0004843
Tsu07g00560 1077 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1047 - -
Tsu07g00560 1077 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1047 - -
Tsu07g00560 1077 SUPERFAMILY DUSP-like 529 600 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00560 Tsu-Chr7 4379606 4388905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00560 86 385 Miscellaneous Gene Families AT4G31670 28.438 1.92e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00560 - - gmx:100815770 1820.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00761 01 6791823 6808928 Tsu07g00560 07 4379606 4388905 PCT