Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00761 ATGGCGACGCATGTCGCTTTTCTCAGATATATAAATCGCACTATTCAGTCAATAAATCAACGTTTTACTCACATTTTCTGCTCCCAAGACGACGACATAAAAAATGTCAGGATTATGGGTGAAGACGATGCTGGGAGAAAGTGCTTGCTAGATGCTCAAGATTGTTCGTCGAATGACAAGAGTTTTGGTGGTGATAAGAAGGGCCAACATGCTGTTTTCAATGTGTTGGATACTATGCTGAAGTCTAGTCTAGAGCGTCTGAAGATTATGAGGGAAAATATATCTTCGGTAAAGATAGGTCTTCATGGATATGCATGTGAATATAACAATGCTGAAAATGAAGCCACCATTAGGTTTTTGTGCTTGGAAGGTAAATTGGCAGCTGCGCTTTGGCTTCGGTGGAGAATGATGCAAAAAGGTATTCTCCTTGACGTGTATACCCACAACCATATTATAAATGGGCTGTGCAAAACTGGTCGTATGGAGAAGGCAGATTGGCTCTTTAGACAGATGTTAGAATTTGGTCCTCATCCCAACTGTGCCACTTACAACACTTTAATTAAGGGCTATTGTGCTCTTAATAGTATAGAAAAAGCTCTGGATCTGTTCACATCCATGTCCAATGCTGTTATTCAGCCAAACAGGGTTACTTGTAGCATATTCGTCCATGCATTTTGTGAGAAAGGTCTTCTAAAGAAAGCTAGAAAGATGCTTGAAGACATAGTAAATGATGATAATGACGAAGATAAACCTGATTTAGTTGCCTCAACTATATTTATGGATTATTACTTTAAGAATGGGGAACGCGGCCGGGCTCTTGGTCTTTGGAATAAGATGATTCAAAAGTGCGCAAGAGTAGATGTTGTTGCTTATAATGTTCTTATCAATGGATTTTGCCTCAATCAACAGATGAATCTTGCATATGGATATGCATGTGAGATGCTTAAGAAAGGTCTAATTCCTGATGTTTTTACTTACAATATTCTTATTGGCGCTCTTTGCAAGAAGGGAAGAATTATTGAAGCTTCCTATATTCTTGGAGTTATGTCTAAAATGGGAATTATGCCTGATCAAATTTCATACAGGATGATGATTCGAGGCCTTTGTTTGAATGGAGATGTTGTAAAAGCAAAATACTTGCTTTTGCATATGTTGAATAATTTTATGGTGCCGAAGCCTATAATTTTATGGAACctaataattcatttttatggAAGATgtgaagatcttgaaaatgCTTTAGTTACAAGAGATCTAATGTTGGCTTATGGCGTTCTCCCTAATGTATTTACTTATAATGCTTTAATTCTTGCACAATTGAAGAGTGGAAATATCCGCAAGGCTTACTCTCTAAAGGAAAAGATGCCTGCAAGCGGTCTTCGTCCTGATGTGGTTACTTATAATTTGTTGATAGGCGATGCTTGCAATTCTGAACGTCTCGATTTAGCATGGAAATTATTGGATGAGATGCAGCGTAGGGGCTGTGAACCAGATTTAATAACTTACACTGAACTTATCAAGGGGTTTTGTATTAGACGTCGCGTGAAGAAGGCAGAAGAGCTTTATGCTAGAATACTGAAATCTGGTTTACATAATGATTGTGTTCCAGTTcgaattatttttaatatgtacTGCAAATTAAGGCAACCAGAAAAGGCATTTAACTTTTATCTAGACTGTCGGACTTTTCATTCAAATGCTGGTCGCTGTCACGTTGTAGCACATACGACTAATGAACTCTCCAGATTGCTTTGTTCTCTTGCATCTTTTCAGAAGAGGCTAAGTAAAAGTGTAAAACCAGTTCGACGCTCGTGTTTCCGCTCAGaaaatgaattttttgtgCAAAAGAGCAGGAAAATACAACTTGGGGGAAGAGCAGTGGGGAAGTTTGTTTATTCCTTAAAGAGGAATTCAACTTTTATTGCTGTCAACACGAGGAGTTTATTAACTACGTTGCCATATATAAGGAGCAATTGGAAGAAATATCATTCACTACATGAAGGTAATGTTACCTGCACAAATTGGTCAACTTTACCTAACAAAAAGCCATGGCGAAGAAAAAAGCTCTTTGTTAAGAAGagATCTTTTCATACTGcttttcttttttccttcttctgggtTAGACAAGGGGATGATGATTCCGGAACTTCTGAAATATGGAGGAAAATACACAAAACAGGTGTCGCAACTGATGATGATATGAACCAACTGTATATGATTACGAAGCCGGTCTGTTCAGGCTGTCGTGTTAATACTAAAGACAACCCAAATTGCTTTTGTGCATTGGTTCCGCCTCCAAGTGGAACGCGAAAGTCTGGAATATGGCAGAAAACATCTGATTTTGTTGATAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGCATCTGCTAATTCACCTGCTGGACTCACAAATCTTGGAGCAACGTGTTATGCTAATAGCATACTCCAATGCTTGTATATGAATAAACATTTCCGAGAAGGATTGTTTTCTGTAGAACCAGATGTTTTACAGCAGGAACCGGTGTTGGATCAATTGGCTCGGCTTTTTGCACAGCTGCATTTAAGTAAGAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGCTGGAATTAGACAATGAAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTGTCGTTGCTTGAGCGTTGCCTTAGACATTCCAAAATTTCCAAGGCAAGAACGGTAGTTCAAGATCTTTTCCGTGGAAGTGTGTCTCATGTGACAACGTGTTCGCAATGTGGAAAAGACTCCGAATCTTCTTCGAAAATGGAAGACTTCTATGAGCTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTACGGACATTACCTGACGTGCTTAATTTTCAGCTTAAGCGCTATGTCTTTCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTCCATTTTCATTTCCCGCTGAACTTAGTATGCACCACAGATTATCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTACTGATACACAAGGGAACTGCAGCTAATAGTGGTCATTACATTGCTCACATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGGTTGTTACTAACTTGGGCCGCTCTCCATTTTCCGAAGAAGCTTCATCCTCTGCTTCTAAATCTGGTAAGAATGATGTAGATCATTCTAATTTATCTGAAGCAAGGGTAGCTGACAGTAATGGAATTGGTTTAAATGTCAAAGTTTCACAATCTTCACTTATGGAGACATTTTCATCTAGCGATGCCTATATGTTGATGTACCATCTTAAGCAAAGCAAATTTTTTAGTGAGAATGGGGGCATGGTTTCTAGTGATAACCATACTGAAAGAGACTCTAGTTCAGTTACTACACAAGACAATGATTGTCTTCCTTCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCATCATATCTTGATGCTTGCCAGCAGTACAATCACAAGAAAGAGGTAGAGTTGAGTCATATCAATGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTACGACCACTGGAACAAccatttttttggatttataGTGACTGGCTTCGCCAGTGGGCCGAAAATGTTACTCCAAGTGCTATTGACAACACATCTATCCAATGTTCACATGGTAAAGTCCCAGTGTCAAAGGTTACCTCGGCAAAGCGGTTGTCTTCTAAAGCATGGGATAGATTATTGTCTAAGTATGGTGGGGGGCCAACACTTTCTCATGATGACTGCTGTTTGGATTGTCTGATTGATGGGGCTCGGAATGTCGTTTCAGCTGACACTTACCGGGATCGAAGAGAATCATTTAAGCAACTTGCACGAGATATTCTTGATGGAAAAAATGAAGACGGAAAGTACTATGTGTCTAGATCATGGTTGCAGCAATGGTGGAAAAGAAAAGTCACTGATGCTCCATCTGAAGCTGATTCTGGACCGACAGCAGCTATTAGTTGTCCACATGAACAACTTATGCCTGAGCAAGCAACTGGTGCTAGGCGGGTGCTTGTTCCTGAGGGTTTTTGGCACTTCTTATATGAAGATGCTATTTCTGTGAAAAACGATGATCTTCTGGTCTGCCATACTTTTCCTTCAGACTCCGGAGAGTGCTCCAAATGCAGTAGCGAATTATCTGAAGTGGCTTGCATGGAGGGCTCTATGagGGTATTAAAACAAAGGCAGCGTCAAAGTCATGAGAAACTGTTCAGTGGGAAAAATACGCCACTCTCTTTAGATTGCAAGTATTTCTTAATCCCTTCCTCTTGGATTTCAAAATGGAGAAATTATGTCAACCCAACAGTCAAGAATTCTGATACACCTGAAACATTAAATTTGGTGATTGGTTCACTGATCTGTGAAAAGCACTCACAACTCATTGAAAGGCCTCCTGAACTGATTTTCAGACGTGGTGCTATATTTCCAAGAGAGCCTTCTGAAAGTGGCTTGACCATCATATCTGAGAATGATTGGAAATGTTTTTGCGAAGAATGGGGTGCTACTGAGATCCAAGGAGTATCTGCAAAGATTGAGAATATTAATGATTCATTGAATGCTATAGCTGGATCTTGTGAAGAGATGGCGATATGTGAGGACCAGTTGGCCAATTGGGATAAGGTGAATAATGAAAGTGGGAATGGTCAATTTTTAATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGTGAGTTAGCACATAAACTTAATTATTGCAATGAGGATATATGTGTAATTCTTGTCCGCGGAAAGGAGGTCCCCAGATCGATCCTGGAGGCTTCAAAGGGATTCGTTGAAACAGATCGAAGGGTTTCTAAACGCTCCAGGAAGACTAAAAATGGGACTTCAATTAATCTAAAAGTATCTGCTTCAACATCAATTTACCAGTTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGTGATATAACCATTGATAACAATGACGAAAATACTACACTTGTGGATGTCAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGACATTGCTGATGAGCTGTGTAATGAGAGAAAGGGTACACAGCATACTGAGGGAGGGTTTCGTGGAACACTTTTAACTTCAAATGTTTCATCTCAGGTTGTTTAG 5334 0.3883 MATHVAFLRYINRTIQSINQRFTHIFCSQDDDIKNVRIMGEDDAGRKCLLDAQDCSSNDKSFGGDKKGQHAVFNVLDTMLKSSLERLKIMRENISSVKIGLHGYACEYNNAENEATIRFLCLEGKLAAALWLRWRMMQKGILLDVYTHNHIINGLCKTGRMEKADWLFRQMLEFGPHPNCATYNTLIKGYCALNSIEKALDLFTSMSNAVIQPNRVTCSIFVHAFCEKGLLKKARKMLEDIVNDDNDEDKPDLVASTIFMDYYFKNGERGRALGLWNKMIQKCARVDVVAYNVLINGFCLNQQMNLAYGYACEMLKKGLIPDVFTYNILIGALCKKGRIIEASYILGVMSKMGIMPDQISYRMMIRGLCLNGDVVKAKYLLLHMLNNFMVPKPIILWNLIIHFYGRCEDLENALVTRDLMLAYGVLPNVFTYNALILAQLKSGNIRKAYSLKEKMPASGLRPDVVTYNLLIGDACNSERLDLAWKLLDEMQRRGCEPDLITYTELIKGFCIRRRVKKAEELYARILKSGLHNDCVPVRIIFNMYCKLRQPEKAFNFYLDCRTFHSNAGRCHVVAHTTNELSRLLCSLASFQKRLSKSVKPVRRSCFRSENEFFVQKSRKIQLGGRAVGKFVYSLKRNSTFIAVNTRSLLTTLPYIRSNWKKYHSLHEGNVTCTNWSTLPNKKPWRRKKLFVKKRSFHTAFLFSFFWVRQGDDDSGTSEIWRKIHKTGVATDDDMNQLYMITKPVCSGCRVNTKDNPNCFCALVPPPSGTRKSGIWQKTSDFVDSLGFDPNTELRASANSPAGLTNLGATCYANSILQCLYMNKHFREGLFSVEPDVLQQEPVLDQLARLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFLTLLLSLLERCLRHSKISKARTVVQDLFRGSVSHVTTCSQCGKDSESSSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSPFSFPAELSMHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEVVTNLGRSPFSEEASSSASKSGKNDVDHSNLSEARVADSNGIGLNVKVSQSSLMETFSSSDAYMLMYHLKQSKFFSENGGMVSSDNHTERDSSSVTTQDNDCLPSHFCEEIQNFNASYLDACQQYNHKKEVELSHINERREEVRSVLAEAPVRPLEQPFFWIYSDWLRQWAENVTPSAIDNTSIQCSHGKVPVSKVTSAKRLSSKAWDRLLSKYGGGPTLSHDDCCLDCLIDGARNVVSADTYRDRRESFKQLARDILDGKNEDGKYYVSRSWLQQWWKRKVTDAPSEADSGPTAAISCPHEQLMPEQATGARRVLVPEGFWHFLYEDAISVKNDDLLVCHTFPSDSGECSKCSSELSEVACMEGSMRVLKQRQRQSHEKLFSGKNTPLSLDCKYFLIPSSWISKWRNYVNPTVKNSDTPETLNLVIGSLICEKHSQLIERPPELIFRRGAIFPREPSESGLTIISENDWKCFCEEWGATEIQGVSAKIENINDSLNAIAGSCEEMAICEDQLANWDKVNNESGNGQFLIKTCPEVCESCIGEKESCELAHKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTKNGTSINLKVSASTSIYQLKMMIWESFGVVKENQILQKGDITIDNNDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNERKGTQHTEGGFRGTLLTSNVSSQVV 1777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00761 1777 Pfam PPR repeat 430 460 IPR002885 -
Tsu01g00761 1777 Pfam PPR repeat 216 242 IPR002885 -
Tsu01g00761 1777 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 802 817 IPR018200 GO:0004843|GO:0006511
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Tsu01g00761 1777 Gene3D Cysteine proteinases 788 1144 - -
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Tsu01g00761 1777 MobiDBLite consensus disorder prediction 1083 1102 - -
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Tsu01g00761 1777 SMART dusp 1226 1302 IPR006615 GO:0004843
Tsu01g00761 1777 Gene3D - 1666 1737 - -
Tsu01g00761 1777 Gene3D Tetratricopeptide repeat domain 70 247 IPR011990 GO:0005515
Tsu01g00761 1777 SUPERFAMILY Ubiquitin-like 1668 1735 IPR029071 -
Tsu01g00761 1777 MobiDBLite consensus disorder prediction 1083 1099 - -
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Tsu01g00761 1777 Pfam Ubiquitin carboxyl-terminal hydrolase 802 1141 IPR001394 GO:0004843|GO:0016579
Tsu01g00761 1777 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1038 1056 IPR018200 GO:0004843|GO:0006511
Tsu01g00761 1777 SUPERFAMILY DUSP-like 1213 1299 IPR035927 -
Tsu01g00761 1777 ProSiteProfiles DUSP domain profile. 1443 1563 IPR006615 GO:0004843
Tsu01g00761 1777 CDD Ubl_USP48 1667 1770 IPR044743 GO:0004197|GO:0004843|GO:0016579
Tsu01g00761 1777 Pfam PPR repeat family 462 510 IPR002885 -
Tsu01g00761 1777 Pfam PPR repeat family 144 191 IPR002885 -
Tsu01g00761 1777 Pfam PPR repeat family 287 335 IPR002885 -
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Tsu01g00761 1777 Pfam PPR repeat 352 384 IPR002885 -
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Tsu01g00761 1777 ProSiteProfiles DUSP domain profile. 1315 1417 IPR006615 GO:0004843
Tsu01g00761 1777 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 801 1144 IPR028889 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 359 391 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 500 531 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 430 464 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 289 323 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Tsu01g00761 1777 TIGRFAM PPR: pentatricopeptide repeat domain 182 214 IPR002885 -
Tsu01g00761 1777 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 708 1746 - -
Tsu01g00761 1777 MobiDBLite consensus disorder prediction 1154 1173 - -
Tsu01g00761 1777 Gene3D Tetratricopeptide repeat domain 397 596 IPR011990 GO:0005515
Tsu01g00761 1777 Gene3D Tetratricopeptide repeat domain 248 396 IPR011990 GO:0005515
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Tsu01g00761 1777 Gene3D - 1199 1298 IPR035927 -
Tsu01g00761 1777 ProSiteProfiles DUSP domain profile. 1208 1300 IPR006615 GO:0004843
Tsu01g00761 1777 SUPERFAMILY Cysteine proteinases 799 1144 IPR038765 -
Tsu01g00761 1777 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 708 1746 - -
Tsu01g00761 1777 CDD Peptidase_C19L 802 1141 IPR033841 GO:0004843
Tsu01g00761 1777 Gene3D - 1440 1559 IPR035927 -
Tsu01g00761 1777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00761 Tsu-Chr1 6791823 6808928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00761 125 559 Glycosyltransferase AT1G05670 27.586 3.98e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00761 - - gmx:100795556 1741.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00761 01 6791823 6808928 Tsu07g00560 07 4379606 4388905 PCT