Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00472 ATGGTGCATCCCTTGGTTGAACGTGCCACTAGCGATTTACTCATCGGTCCTGATTGGGCTTTGAACATCGAGATCTGTGATGTTGTCAATCGTGATCCCGGGGAAACAAAAGCTGTTGTTAAAGGTTTAAAGAAGCGGATTGGACATAGAAATTCTAAAATTCAACTTCTTGCACTAACTTTGCTGGAGACAATCGTAAAGAATTGTGGGGACGTTGCCCACATGCATGTTGCCGAGAGAGACGTTCTTCACGAGATGGTGAAAATAGTAAAGAAGAAGCCCAATTCTCATGTCAAAGAGAAGATACTGATTCTTATTGACACTTGGCAAGAAGCTTTTGGAGGCCCAAGGGCAAGATATCCACAGTATTATGCTGCCTACCAGGAACTGTTGCATGCGGGGGCTGCATTCCCTCAAAGGTCTGAGCAATCTGCACCTGTATTCACGCCACTACAAACACAACCATTGGGATCATACCCTCAAAATATACGCGACTCTGATGCTCGGCAACCCCCAGCCGAGTCCTCAGTGGAATCTGAGTTTCCAACCCTCAGTTTGTCTGAAATTCAGAATGCACGTGGTCTAATGGACGTTCTTACTGAAATGCTTACTGCTTTAGAGCCTGGTAACAAAGAAGGGCTTCGTCAGgaagttgttgttgatttagtgGACCAGTGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCCACTTCGGATGAGTCACTGCTATGCCAAGGACTAGCTCTTAATGATGATCTGCAGCGTGTGCTTGCCAAGCACGAATCCATTGCTTCAGCAGCTGCTTCAGCAGCTGCTGTTCCAAATCAAGCAGCTGCTGTTCCAAATCACATTGAGAAACCGAATCCTGCACCTACCCACATTGAGAAACCAAATCCTGCACCTACCGGAGCACTTGTAGATGTCAATGATTCTTTAATTGATACTGGAGATACTAGTAAACAAACTGATGCGAGATCATCTTCTAGTGCTGAAGCAGGGTCTCAAACACTGAATCAGTTGTTGCTTCCTGCTCCCCTGACATCAAATGGCTCAGCTCCTACCTTAAAGGTTGATCCCAAATTGGATCTGCTCAGTGGTGAAGAGTACGGCTCACCAAAAGCAGATAATTCACTTGCTATTGTTCCTGTAGGAGAACAACAGCCAGCCAGTCCTGCGCCTCAACAGAATAATGCCCTTGttctttttgatatgttttctAATGGAAACAATGTGCCAACTCCTGTTAATACCCGGCCAATAGCTCCCcaatttcaacaacaaactaTCATATCTCAAGGTGTATTTTACCCCAACGGAAGTATGCCAAATGTGGGGTCACCACAATCACTATATACTCAAAACACAGGTCCTGCCTGGAATGGTCAGGTTgtgcagcagcagcagcagcccGTTTATGGTCCACAAAGTGGTGGATCATTTCCGCCTCCTCCATGGGAAACTCAACCTGCAGACAATGGTAGTCCAGTAGCAGGCAGTCAATACCCGCAGCCAATGCACGTCACTCATATGGTCATGACACAAATACAAACTACCACACCTCCTCAAGGACCTCAAGCAATGGGGTATGACCAGGCTTCTGGAATGTATATGCAGCCAAATGCTAGCCATATTCCTACAATTCCTACAATCAATAATCAGGTTCAAAGTAACCAATTCGGCTTGCAGCCTCCGTATATTCAGGGTATCACAGGTCCTTATATGGGTATGGTTCCACATCAAATGCAAAATGGTCCTGTGGCTTCCATGTATCCTCAACAGATGTATGGTAACCAATTCTTAGGATATGGATATGGTCAGCAACAGCAAcagcaacagcaacaacaacagcaacaaggGCTTCAATATGTCGAGCAACAAATGTATGACTTATCTGTGAGAGATGATAATGCTCTAAGAAATCCTTACCAGGTTTCTGCTGCATCTTATGCACCACCCATAAAGCCTTCTAAGCCAGAGGATAAGTTATTTGGTGACCTTATTGACATGGCAAGAGTGAAACCAAAATCTACTCCTGGCccttaa 2052 0.4274 MVHPLVERATSDLLIGPDWALNIEICDVVNRDPGETKAVVKGLKKRIGHRNSKIQLLALTLLETIVKNCGDVAHMHVAERDVLHEMVKIVKKKPNSHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSEQSAPVFTPLQTQPLGSYPQNIRDSDARQPPAESSVESEFPTLSLSEIQNARGLMDVLTEMLTALEPGNKEGLRQEVVVDLVDQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESIASAAASAAAVPNQAAAVPNHIEKPNPAPTHIEKPNPAPTGALVDVNDSLIDTGDTSKQTDARSSSSAEAGSQTLNQLLLPAPLTSNGSAPTLKVDPKLDLLSGEEYGSPKADNSLAIVPVGEQQPASPAPQQNNALVLFDMFSNGNNVPTPVNTRPIAPQFQQQTIISQGVFYPNGSMPNVGSPQSLYTQNTGPAWNGQVVQQQQQPVYGPQSGGSFPPPPWETQPADNGSPVAGSQYPQPMHVTHMVMTQIQTTTPPQGPQAMGYDQASGMYMQPNASHIPTIPTINNQVQSNQFGLQPPYIQGITGPYMGMVPHQMQNGPVASMYPQQMYGNQFLGYGYGQQQQQQQQQQQQQGLQYVEQQMYDLSVRDDNALRNPYQVSAASYAPPIKPSKPEDKLFGDLIDMARVKPKSTPGP 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00472 683 MobiDBLite consensus disorder prediction 286 337 - -
Tsu07g00472 683 MobiDBLite consensus disorder prediction 315 337 - -
Tsu07g00472 683 Pfam VHS domain 5 123 IPR002014 GO:0035091|GO:0043130
Tsu07g00472 683 SUPERFAMILY ENTH/VHS domain 4 138 IPR008942 -
Tsu07g00472 683 SUPERFAMILY GAT-like domain 140 267 - -
Tsu07g00472 683 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Tsu07g00472 683 PANTHER TARGET OF MYB PROTEIN 1 1 681 - -
Tsu07g00472 683 CDD GAT_GGA_like_plant 188 266 - -
Tsu07g00472 683 PANTHER TOM1-LIKE PROTEIN 1 681 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tsu07g00472 683 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Tsu07g00472 683 Gene3D - 1 148 IPR008942 -
Tsu07g00472 683 Gene3D - 182 275 IPR038425 -
Tsu07g00472 683 CDD VHS 5 130 - -
Tsu07g00472 683 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Tsu07g00472 683 MobiDBLite consensus disorder prediction 158 182 - -
Tsu07g00472 683 Pfam GAT domain 195 266 IPR004152 GO:0035091|GO:0043130
Tsu07g00472 683 MobiDBLite consensus disorder prediction 473 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00472 Tsu-Chr7 3656332 3664220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00472 - - gmx:100805762 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00472 07 3656332 3664220 Tsu07g00472 07 3656332 3664220 ECH
Tsu07g00472 07 3656332 3664220 Tsu01g00897 01 8195930 8203925 PCT