Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00897 ATGGTGAATTCCATGGTTGAACGCGCCACCAGCGATATGCTCATCGGTCCCGATTGGGCCATGAATATTGAGATCTGTGACATGCTCAATCATGACCCTGGGCAAGCAAAGGACGTTGTCAAAGGTATAAAGAGGAAGATTGGAAGTAGAAATTCTAAAGTTCAACTCCTTGCACTAACTTTGCTGGAAACAATCATAAAGAACTGTGGAGATATGGTTCACATGCATGTTGCAGACAGAGATGTGCTTCATGAGATGGTGAAAATAGTAAAGAAAAAGCCTGATATTCATGTCAAAGAGAAGATACTGGTTCTTATAGATACTTGGCAAGAAGCTTTTGGCGGACCAAGGGCAAGATATCCACAATACTATGCTGCATACCAAGACCTGTTGCGTGCCGGGGCAGTATTCCCCCAGAGATCTGAACAATCTGCACCCGTATTCACTCCTCCACAAACACAACCGTTGGCTTCATACCCTGCAAACATACGTGACTCGGATGCTCGGCCAGACACAGCTGAGACCTCTGCAGAATCTGAATTTCCAACGCTAAGTTTGACCGAAATACAGAATGCACATGGTATTATGGATGTTCTTTCAGAAATGCTCAATGCAATAGACCCTAATAACAAAGATGGGCTTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTAGAACATACAAGCAAAGAGTGGTACACCTTGTAAACTCAACTACGGATGAATCACTGCTATGCCAGGGACTAGCTCTCAATGATGATCTGCAGCGTCTACTTGCTAGGCATGAATCTATTTTATCAGGAACTTCTACTCAAAATGGAAATCAGATAGAGAATTCAAAACCTACATCTGCCGGGCAACTTGTAGATATTGATGCTCCTTTGGTTGATACTGGAGATACTAGCAAACAAACTGATGGGAGGTCCTCTTCTGGTGCTGAAGCAGGGTCCCAAACATTGAATCAGTTAATGCTTCCCGCACCAGCTACATCCAATGGTTCAGCTGTACCTGCAAAAGTTGATCCCAAGTGGGACCTACTCAGTGGTGATAACTATAACTCACCAAAAGCAGATACTTCACTTGCTCTTGTTCCTCTAGGAGAACAACAACCTGCCACTCCTGTGTCTAATCAGAATGCCCTTGTTCTTTTTGATATGCTTTCTAATGGAGACACATCTGTCAATACCCAGCCGAACCAGCAAACTAATGTTGCTGGACAATCTGATCCATTTACTCCCcaatatcaacaacaacagcagACATTCGCATCTCAAGGTGGATTTTACCCCAATGGGAATGTGCCAAATGCTGGTTCACCTCAGTATGAGCAATCGCCGCATACACAAAGTACAGCTCCTGCCTGGAATGGTCAGGTTCCAGAACAACAGCCAGCTAACCCTTATGGTGCACAAACTAGTGGTTCATTGCCGCCACCTCCCTGGGAAGCTCAACCAGAAGACAATGGCAGTTCGGTTGCAGGTGCTCAGTATGCACAACCACCTCAATACAGTCATATGGCTATGCCACATGTACAGAGTACCGCAAATCATCAAGGGCCTCAAGCAATGAGTTATGGCCAAGCCGGTGGTATGTATATGCAGCCAAATCCTAACGGCCATATGTCAGCAGTGAATAACCAGGTTGGAAGCAATCAATTTGGCATGCACCCTCAACATATTCAAGGTGCTGCGGGGCCTTACATGGGTATGGCTTCACATCAAACACAAGGTGGTCCTGGGGTCCCCATGTATCCACAACAGATGTATGGAAACCAATTTGCAGGTTATGGTTACGGTCAACAACAAGGAGTTCAATACGTTGAGCAGCAAATGTATGGTCTGTCTGTCAGAGATGATAGTTATTTGCGACACTCTAATCAGGTTCCTACACCTTATGTTCCATCAGGGCGGCCCTCGAAGCCAGAGGATAAGTTATTTGGGGACCTTGTCGACATGGCAAAAGTGAAGCCAAAACCATCTCCGGCTCGAGCTGGTAGCATGTAA 2007 0.4504 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKRKIGSRNSKVQLLALTLLETIIKNCGDMVHMHVADRDVLHEMVKIVKKKPDIHVKEKILVLIDTWQEAFGGPRARYPQYYAAYQDLLRAGAVFPQRSEQSAPVFTPPQTQPLASYPANIRDSDARPDTAETSAESEFPTLSLTEIQNAHGIMDVLSEMLNAIDPNNKDGLRQEVIVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLALNDDLQRLLARHESILSGTSTQNGNQIENSKPTSAGQLVDIDAPLVDTGDTSKQTDGRSSSGAEAGSQTLNQLMLPAPATSNGSAVPAKVDPKWDLLSGDNYNSPKADTSLALVPLGEQQPATPVSNQNALVLFDMLSNGDTSVNTQPNQQTNVAGQSDPFTPQYQQQQQTFASQGGFYPNGNVPNAGSPQYEQSPHTQSTAPAWNGQVPEQQPANPYGAQTSGSLPPPPWEAQPEDNGSSVAGAQYAQPPQYSHMAMPHVQSTANHQGPQAMSYGQAGGMYMQPNPNGHMSAVNNQVGSNQFGMHPQHIQGAAGPYMGMASHQTQGGPGVPMYPQQMYGNQFAGYGYGQQQGVQYVEQQMYGLSVRDDSYLRHSNQVPTPYVPSGRPSKPEDKLFGDLVDMAKVKPKPSPARAGSM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00897 668 MobiDBLite consensus disorder prediction 142 179 - -
Tsu01g00897 668 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Tsu01g00897 668 MobiDBLite consensus disorder prediction 270 289 - -
Tsu01g00897 668 MobiDBLite consensus disorder prediction 297 317 - -
Tsu01g00897 668 MobiDBLite consensus disorder prediction 393 473 - -
Tsu01g00897 668 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Tsu01g00897 668 CDD VHS 2 132 - -
Tsu01g00897 668 MobiDBLite consensus disorder prediction 393 495 - -
Tsu01g00897 668 CDD GAT_GGA_like_plant 188 266 - -
Tsu01g00897 668 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Tsu01g00897 668 MobiDBLite consensus disorder prediction 142 160 - -
Tsu01g00897 668 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Tsu01g00897 668 Gene3D - 1 155 IPR008942 -
Tsu01g00897 668 MobiDBLite consensus disorder prediction 626 645 - -
Tsu01g00897 668 PANTHER TOM1-LIKE PROTEIN 1 662 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tsu01g00897 668 PANTHER TARGET OF MYB PROTEIN 1 1 662 - -
Tsu01g00897 668 SUPERFAMILY GAT-like domain 141 269 - -
Tsu01g00897 668 Pfam GAT domain 196 269 IPR004152 GO:0035091|GO:0043130
Tsu01g00897 668 Gene3D - 183 275 IPR038425 -
Tsu01g00897 668 MobiDBLite consensus disorder prediction 299 317 - -
Tsu01g00897 668 MobiDBLite consensus disorder prediction 270 287 - -
Tsu01g00897 668 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00897 Tsu-Chr1 8195930 8203925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00897 - - gmx:100809022 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00897 01 8195930 8203925 Tsu01g00897 01 8195930 8203925 ECH
Tsu07g00472 07 3656332 3664220 Tsu01g00897 01 8195930 8203925 PCT