Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00444 ATGGAAGACGCCGGAAGTTATTCGAACCCCGACAACCTATCGCGCAAGATTGTTGACATCGCTGCTGGTGAATCACACACTCTCCTTCTTACTGGAGATGGCAATATGTACACTTGGGGTAAAGGAATGTTTGGAAGACTTGGGCTTGGTTCTCAAAAAGATGAACTTTACCCAGTAAAGCTCAACTTTGAAAACCCTAATGGAACTGGAGATTCTGTCAAAATAGTGGGAATTGCTGCTGGTGCTTATCATAGTCTTGCTCTTGCAGGTTCTTtgtctatatattatattactattatcTGCATCCTTGACTACTTTATGGATGGTCAACTTGGTATCAGTGGAGAGGACTCGTATGATTCCCTAGTTCCTTGCTTACTTAGCACGTTTCTTGAGCTGCAACCGCCCGATTCTTCAACAGGTCTATCTGAATCAGAAGCCAAACCATCACTAAAGATGTGTAGTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAATCGTGGCACCCTATGGATGTGGGGTAACATCCCACAAGAAAGCAAAGAAGGCGGGTTATCTTTTGTAAGCAGTTTCACTCCAACACCAGTCTGGGATTTTCATGGTCGAGCTGTTGTCAAGGTTGCATGTGGAAACGAACATGTTGTTGCTCTGGTTAGTGCTACAGAATCACACAAGGATGAAGATTTAATGTGCTACTCTTGGGGTTGTAACGGTCATGGCCAGTTAGGGTTGGGGGATAGGCAGAGCAGGCTGCATCCAGAAGTTGTAAAAATATTTGACGAGGAGACTCCTTGGACAAGTTATGATGTAGCATGTGGCGCCTTTCACACTGCTTTGCTTGCTCACAAGAAAAGTGGTGACACATTAGAAAGCATGTGCTGGACCTTTGGCCTTAGTGAAAATGGCCAACTCGGGCATGGAACAACACAGAGCGCTTTATTTCCTATGGCCGTTAAGGAATTGCCACAAAATGCATATCTTATTTCTGTTGACTGTGGCTTGTTTCATACATGTGTTGTTTCCTCAACTGGGGATGTGTGGTCTTGGGGAATGGAGAAAGGTCTTGGCTTATGTCCTGATGCTAATCGTTCTGAAACAGGTTCTGGTGGTGACGCACTCTCTCCCCTTCTCATCTCATGCAAGTCAGATCAACCTATTTTTCCGGGTCCTGTGAAAGTCGTGTGTGGGGCAGCACATACTGTTGTTGTTGCACAGAAGGGACATGAGGTGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGGAATGGTAAGGAAATGGATAGTTACACTCCCACCATCGTTCTGTGGCCTCCAGCGACAGAGGATCTCAAGGAAGAGGAATTGAAGAGCAATGATGAACAAGATAAGGATGCAGAAAAGAAAACCAAAGTAATAACAGAAACAGACGAAAAATTATCCTCGGCGTTGAATGAGCTTAAGTTGCTTCAGTCAAAGCTATCTATAATGGAAAAATATGCCAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAGCAAGATATCCCTGTTTCAATGCAGAATTCGGGTTCAATGGATATTGCAAAAGAATGGGACAACATGTTAGAGGCAGCAGATAATAGGAAGCTAGTTAGGATGGAAATGTTTTATCGTGACATGCTAGCTGGTGTCAAAGATAAGTTAATGAAGAGAAAGATCAAGGAAATTATAAAGGAGTGTCTCCCATCCTCAGAAGTAAATAATAATTAG 1743 0.4303 MEDAGSYSNPDNLSRKIVDIAAGESHTLLLTGDGNMYTWGKGMFGRLGLGSQKDELYPVKLNFENPNGTGDSVKIVGIAAGAYHSLALAGSLSIYYITIICILDYFMDGQLGISGEDSYDSLVPCLLSTFLELQPPDSSTGLSESEAKPSLKMCSVKAGGMMSLAIDNRGTLWMWGNIPQESKEGGLSFVSSFTPTPVWDFHGRAVVKVACGNEHVVALVSATESHKDEDLMCYSWGCNGHGQLGLGDRQSRLHPEVVKIFDEETPWTSYDVACGAFHTALLAHKKSGDTLESMCWTFGLSENGQLGHGTTQSALFPMAVKELPQNAYLISVDCGLFHTCVVSSTGDVWSWGMEKGLGLCPDANRSETGSGGDALSPLLISCKSDQPIFPGPVKVVCGAAHTVVVAQKGHEVWSWGRGRSGVLGNGKEMDSYTPTIVLWPPATEDLKEEELKSNDEQDKDAEKKTKVITETDEKLSSALNELKLLQSKLSIMEKYASILHGSIFGKPFDEQDIPVSMQNSGSMDIAKEWDNMLEAADNRKLVRMEMFYRDMLAGVKDKLMKRKIKEIIKECLPSSEVNNN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00444 580 SUPERFAMILY RCC1/BLIP-II 13 96 IPR009091 -
Tsu07g00444 580 PRINTS Chromosome condensation regulator RCC1 signature 170 186 IPR000408 -
Tsu07g00444 580 PRINTS Chromosome condensation regulator RCC1 signature 209 225 IPR000408 -
Tsu07g00444 580 PRINTS Chromosome condensation regulator RCC1 signature 75 88 IPR000408 -
Tsu07g00444 580 PRINTS Chromosome condensation regulator RCC1 signature 335 353 IPR000408 -
Tsu07g00444 580 PRINTS Chromosome condensation regulator RCC1 signature 405 426 IPR000408 -
Tsu07g00444 580 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Tsu07g00444 580 Gene3D - 2 229 IPR009091 -
Tsu07g00444 580 Gene3D - 230 474 IPR009091 -
Tsu07g00444 580 Coils Coil 468 488 - -
Tsu07g00444 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 293 345 IPR000408 -
Tsu07g00444 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 91 IPR000408 -
Tsu07g00444 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 3 578 - -
Tsu07g00444 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 346 408 IPR000408 -
Tsu07g00444 580 Pfam Regulator of chromosome condensation (RCC1) repeat 346 405 IPR000408 -
Tsu07g00444 580 Pfam Regulator of chromosome condensation (RCC1) repeat 33 88 IPR000408 -
Tsu07g00444 580 Pfam Regulator of chromosome condensation (RCC1) repeat 234 282 IPR000408 -
Tsu07g00444 580 Pfam Regulator of chromosome condensation (RCC1) repeat 296 342 IPR000408 -
Tsu07g00444 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 231 285 IPR000408 -
Tsu07g00444 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 170 222 IPR000408 -
Tsu07g00444 580 SUPERFAMILY RCC1/BLIP-II 109 441 IPR009091 -
Tsu07g00444 580 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 3 578 - -
Tsu07g00444 580 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 20 30 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00444 Tsu-Chr7 3403859 3406716 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00444 - - gmx:100815199 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00444 07 3403859 3406716 Tsu07g00444 07 3403859 3406716 ECH
Tsu07g00444 07 3403859 3406716 Tsu01g00884 01 8083969 8086816 PCT