Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03203 ATGGCTATAGAATGCATTACAAGTACAAATCACATGAATCAACCATCAAAAGATTCAAAACTCAAccatgaaaaaaatgaaaatgaagaatcaTCATTAGTTTTTGATGCATCTTTTCTAAAGAATCAACTTCACATTCCAAAACAATTCATTTGGCCAGATGAAGAGAAACCATGCATGAATGTGAAAGAACTTGATGTTCCACTTATTGATTTGAAAAATTTCTTATCTGGTGACCCTTTTGCTGCAATGGAAGCTTCTAAAATCATTGGTGAAGCATGTGAAAAACATGGTTTTTTTCTTGTTGTTAATCATGGTATTGATGCAAAGTTAATAGAACATGCTCATAGTTacatgaatgatttttttgaggTTCCTCTGTCTCAAAAACAGAGAGCTCAAAGAAAAACAGGGGAACATTGTGGTTATGCTAGTAGTTTTACAGGAAGATTCTCCTCAAAACTTCCATGGAAAGAGAcactttcttttcaattttcagaTGAGAAAAACTCACCTAAAATTGTTAAAGACTACTTATGCAACACTTTAGGGGAAGATTTTGAACAATTTGGGGAGGTTTATCAAAAGTATTGTGAAGAAATGAGCACTCTTTCTTTAGGGATAATGGAGCTACTTGGAATGAGTCTTGGAGTTGGAAAAGATTGTTTTAGAGAATTTTTTGAAGAGAACAAATCAATAATGAGACTTAATTATTACCCTCCATGTCAAAAACCTGATCAAGCTTTAGGAACTGGACCTCATTGTGATCCAACATCTTTAACCATTCTACATCAAGACCAAGTTGGTGGCTTGcaagtttttgttgaaaatgaatGGCATTCCATTAAGCCAAATTTCAATGCTTTTGTTGTCAATATTGGTGACACTTTCATGGCACTTTCAAATGGAAGATACAAGAGTTGTTTACATAGGGCAGTGGTGAACAACAAAACAACAAGAAAATCTCTTGCATTCTTTTTATGTCCAAAAGGTGATAAGGTGGTTAGTCCACCATGTAAATTGGTGAATGATTTGACACCAAGGATTTATCCAGATTTTACATGGCCTATGCTTCTTGAATTTACTCAAAAACATTATAGAGCTGATATGAGAACACTTGAGGCATTTACAAATTGGATTCAACAAAAAAGTGGTTGA 1158 0.3178 MAIECITSTNHMNQPSKDSKLNHEKNENEESSLVFDASFLKNQLHIPKQFIWPDEEKPCMNVKELDVPLIDLKNFLSGDPFAAMEASKIIGEACEKHGFFLVVNHGIDAKLIEHAHSYMNDFFEVPLSQKQRAQRKTGEHCGYASSFTGRFSSKLPWKETLSFQFSDEKNSPKIVKDYLCNTLGEDFEQFGEVYQKYCEEMSTLSLGIMELLGMSLGVGKDCFREFFEENKSIMRLNYYPPCQKPDQALGTGPHCDPTSLTILHQDQVGGLQVFVENEWHSIKPNFNAFVVNIGDTFMALSNGRYKSCLHRAVVNNKTTRKSLAFFLCPKGDKVVSPPCKLVNDLTPRIYPDFTWPMLLEFTQKHYRADMRTLEAFTNWIQQKSG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03203 385 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 230 329 IPR005123 -
Tsu06g03203 385 SUPERFAMILY Clavaminate synthase-like 40 369 - -
Tsu06g03203 385 Gene3D - 38 367 IPR027443 -
Tsu06g03203 385 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 22 381 - -
Tsu06g03203 385 MobiDBLite consensus disorder prediction 7 27 - -
Tsu06g03203 385 PRINTS Isopenicillin N synthase signature 289 315 - -
Tsu06g03203 385 PRINTS Isopenicillin N synthase signature 254 275 - -
Tsu06g03203 385 PRINTS Isopenicillin N synthase signature 90 107 - -
Tsu06g03203 385 Pfam 2OG-Fe(II) oxygenase superfamily 232 329 IPR044861 -
Tsu06g03203 385 Pfam non-haem dioxygenase in morphine synthesis N-terminal 67 173 IPR026992 -
Tsu06g03203 385 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03203 Tsu-Chr6 42577265 42579592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03203 44 379 Glycosyltransferase AT5G59530 27.246 5.90e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03203 K05282 - gmx:100305378 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03203 06 42577265 42579592 Tsu06g03203 06 42577265 42579592 ECH
Tsu06g03203 06 42577265 42579592 Tsu01g04490 01 52554073 52556854 PCT