Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04490 ATGACAATAAACTGCATAACAAGCATGCCTCAACCACCAACAAACCAAGAAACCAAACCACTAGTTTTTGATGCATCAGTTCTCAAAAACCAAGTTAATCTACCAACACAATTCATTTGGCCTGATGAAGAACAAGCTTGTTTAAATATACCTCAACTCGATGTACCATTTATCGACTTGGGAGGTTTTCTCTCAGGTGATCCAGTTGCAGCAATGGAAGCATCAAAAGTTGTTGGTGAAGCATGTCAAAAACATGGTTTTTTTCTTGTTGTTAATCATGGTATTGATCAAAAGTTAATCTCTGATGCTCATGTTTTCATGGATGACTTTTTTGAACTTCCCCTGTTTCAAAAACAGAGAGCTCAGAGAAAAACAGGGGAACACTGTGGTTATGCTAGTAGTTTCACCGGTAGATTCTCTTCTAAACTTCCTTGGAAAGAGACACTTTCTTTTCAATTCTCAGCTGATAAAAAATCACCAAATCTTGTCAGAGACTATCTCTGCAATACAATGGGCAATGAGTTTCAGCAATTTGGGGAGGTTTATCAGGACTACTGCAAAGCTATGAGCAATCTTTCATTAGGTGTAATGGAGCTTCTAGGAATGAGCCTTGGAGTTGGTAAAGCATATTTTAGGGAATTCTTTGAAGAGAATAGTTCAATAATGAGGCTCAATTACTACCCTACTTGTCAAAAACCTGAGCTTACTTTAGGTACTGGACCTCATTGTGATCCAACATCATTAACCATTCTTCACCAAGATCAAGTAGGTGGCTTGCAAGTTTATGTTGATGATCAATGGCATTCCATTACTCCACATTTCAATGCTTTTGTTGTCAATATTGGTGATACCTTCATGGCACTTTCAAATGGGAGATACAAGAGCTGTTTGCATAGGGCAGTGGTAAACAGCGAAAAGACAAGAAAATctcttgctttctttttatgTCCATTAAGTGATAAAGTGGTAACTCCACCATGTGAATTGGTGGACAATTACAACCCAAGGATCTACCCTGATTTCACATGGTCTATGTTACTTGAGTTCACTCAAAAGCACTATAGAGCTGATATCAAAACACTTGAAGCATTTGCCAACTGGATTCAACATAAAACCACATGA 1122 0.3743 MTINCITSMPQPPTNQETKPLVFDASVLKNQVNLPTQFIWPDEEQACLNIPQLDVPFIDLGGFLSGDPVAAMEASKVVGEACQKHGFFLVVNHGIDQKLISDAHVFMDDFFELPLFQKQRAQRKTGEHCGYASSFTGRFSSKLPWKETLSFQFSADKKSPNLVRDYLCNTMGNEFQQFGEVYQDYCKAMSNLSLGVMELLGMSLGVGKAYFREFFEENSSIMRLNYYPTCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVYVDDQWHSITPHFNAFVVNIGDTFMALSNGRYKSCLHRAVVNSEKTRKSLAFFLCPLSDKVVTPPCELVDNYNPRIYPDFTWSMLLEFTQKHYRADIKTLEAFANWIQHKTT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04490 373 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 161 IPR026992 -
Tsu01g04490 373 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 218 317 IPR005123 -
Tsu01g04490 373 Gene3D - 25 355 IPR027443 -
Tsu01g04490 373 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 14 370 - -
Tsu01g04490 373 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 370 - -
Tsu01g04490 373 Pfam 2OG-Fe(II) oxygenase superfamily 220 317 IPR044861 -
Tsu01g04490 373 SUPERFAMILY Clavaminate synthase-like 27 357 - -
Tsu01g04490 373 PRINTS Isopenicillin N synthase signature 242 263 - -
Tsu01g04490 373 PRINTS Isopenicillin N synthase signature 78 95 - -
Tsu01g04490 373 PRINTS Isopenicillin N synthase signature 277 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04490 Tsu-Chr1 52554073 52556854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04490 37 367 Glycosyltransferase AT5G59530 28.402 2.30e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04490 K05282 - gmx:100816992 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04490 01 52554073 52556854 Tsu01g04490 01 52554073 52556854 ECH
Tsu06g03203 06 42577265 42579592 Tsu01g04490 01 52554073 52556854 PCT