Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03130 ATGAAATCGTTGCCGAGATCCACCGCCTTGTTGGTGTTTCCGTTGCTGTTAATCGTCGGCGCGTTGGTGTACGCGCGGTACCTTGAAACACCTGAAATTTCCTCAGCAGTAGCGCGTTCATCTAGCGAAGAAATCCTAACCACAAAATCATACGAAATACCAAAAACACCCCAAAATGAAACAGAGATACCATTAGATTGCAATGGATACAACCACACAGGAAAATGTCCCAATCACCAAATCTCATTAAACAATCAACACTATCCATCAAATTCCACGTGTCCAGATTACTTCCGTTGGATCCACGAAGATTTAAGACCATGGGCCCACACAGGaataacaaaagaaacaatagaAAAAGCAAGACCAACagcaaatttcaaattaataatattaaaaggAAAAGCTTATTTAGAAACATATGAAAAAGCATTTCAAACAAGAGATACTTTTACTCTATGGGGTATCCTACAAATGTTAAGGAAGTACCCTGGAATGTTACCTGATTTGGAGTTTATGTTTGATTGTGTCGATTGGCCAGTTGTTTCAGCTGGCCAATATAACAGACTTGATGGTGACGTTGATCCTCCACCACTCTTTCGTTATTGTGGTAATGATGCAACTTTGGATATTGTTTTTCCTGATTGGTCCTTTTGGGGATGgCCTGAGGTTAATATAAAGCCATGGGGGTTATTGATGGGAGAGTTGAAAGAGGGAAACAAGAGGATTGAATGGATGAAGAGAGAACCTTATGCTTATTGGAAAGGTAATCCAACTGTTGCTGAAACAAGACAAGATCTTATGAAATGTaatgtttctgaaaaagaagATTGGAATGCTCGTTTATATTCTCAGGATTGGGGACGAGAGTCGCAAGAAGGGTACAAAAAATCAGATTTGGCAGGCCAATGCACTCATAAATATAAGGTATACATTGAAGGTTCTGCTTGGTCAGTGAGTGAAAAATACATTCTAGCATGTGATTCTCCCACTTTACTTGTGAAACCTCATTACTATGATTTCTTCACAAGAGGGTTAATTCCAGTGCATCACTATTGGCCTATTAAGGAAGATGATAAGTGTAAGTCCATTAAGTTTGCTGTGGATTGGGGCAATAGTCACAAGACAAAGGCACACGATATTGGAAAAGCAGCTAGTAATTTCATTCAAGAAGAATTGAAGATGGATTATGTGTATGACTATATGTTTCATCTCCTAAATTCATATGGTAAACTCTTTAGATACAAACCATCTATAAGTGATAAAGCTGTTGAACTATGTGCGGAATCAATGGTTTGTAAAGCAGAAGGAAGAGAAAAGAAATTTATGATGGAATCATTGGTAAAGGCTCCTTCAAACACCAATCCATGCACCATGCCTCCGCCTTTTGATCCTCCTTCTTTACACGCaaacataaaaagaaagcaAGGTTCAATTCAACGAGTCGAATTTTGGGAGAAAAGTTATTGggagaaacaaaatatgaaatcgTAA 1494 0.3648 MKSLPRSTALLVFPLLLIVGALVYARYLETPEISSAVARSSSEEILTTKSYEIPKTPQNETEIPLDCNGYNHTGKCPNHQISLNNQHYPSNSTCPDYFRWIHEDLRPWAHTGITKETIEKARPTANFKLIILKGKAYLETYEKAFQTRDTFTLWGILQMLRKYPGMLPDLEFMFDCVDWPVVSAGQYNRLDGDVDPPPLFRYCGNDATLDIVFPDWSFWGWPEVNIKPWGLLMGELKEGNKRIEWMKREPYAYWKGNPTVAETRQDLMKCNVSEKEDWNARLYSQDWGRESQEGYKKSDLAGQCTHKYKVYIEGSAWSVSEKYILACDSPTLLVKPHYYDFFTRGLIPVHHYWPIKEDDKCKSIKFAVDWGNSHKTKAHDIGKAASNFIQEELKMDYVYDYMFHLLNSYGKLFRYKPSISDKAVELCAESMVCKAEGREKKFMMESLVKAPSNTNPCTMPPPFDPPSLHANIKRKQGSIQRVEFWEKSYWEKQNMKS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03130 497 SMART cap10 166 416 IPR006598 -
Tsu06g03130 497 Pfam Glycosyl transferase family 90 90 486 IPR006598 -
Tsu06g03130 497 PANTHER MOTIF-CONTAINING PROTEIN 1, PUTATIVE-RELATED 8 495 - -
Tsu06g03130 497 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 8 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03130 Tsu-Chr6 41531414 41538338 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03130 - - gmx:100800365 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01738 04 18516250 18524662 Tsu06g03130 06 41531414 41538338 ECH
Tsu06g03130 06 41531414 41538338 Tsu06g03130 06 41531414 41538338 ECH