Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03099 ATGGGAAATTCTTTTGGGTGTTCAGCTTCTGGTGAGAGATTGGTATCTGCTGCAAGAGATGGTGATTTGATTGAAGCAAAGATGCTTTTGGAATTCAATCCTGGTCTTGCAAAGTACTCAACTTTTGGTGGTCTTAATTCACCTCTTCATTTTGCAGCTTCTAAGGGTCATAACGAGATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACAGCTTTGATGCAAGCTTGTAGACATGGTCATTGGGAAGTCGTACAAACCCTTATGCTCTACCGATGCAATGTTATGAAAGCAGATTATCTGAGTGGAAGGACAGCTCTTCACTTTGCAGCTGTTAGTGGGCATGTAAGATGCATTAGACTTGTTGTGGCTGACTTTGTTGCAAGTGTTCCTTATGAAACTCTACATGCTCGTGTTGATGCTGATGTGGGTGATGGATTAAATACGAAAAGAAAACAGGAACAAAGTGCATTAtgcaagtttgtaaacaagacaGCTGATGCTGGTATTACTGCACTTCATATGGCGGCGTTAAACGGATATTTTGATTGTGTACAACTGCTACTGGATCTTAATGCATATGTGTCAGCTGCAACATATCATTATGGAACATCTATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTACGCTGCTTGTGGTGGAAATTTAAAATGCTGTCAGatCCTCCTTGCAAAAGGCGCTACTCGGATGGCTTTGAACTGCAACGGGTGGCTTCCGCTTGATGTTGCTAGGATGTGGGGCCGTCATTGGCTTGAACCGTTGCTGTCACCCAGTTCAGATGCCGTTGTATCACCATTCCCtacttcaaattatttgtcCTTGCCCCTCATGAGTGTTCTCAACATAGCCAGAGAATGTGGATTGCACTCGTCTACGACCTCCTCTAATGAGATCGACTTCTGTGCTGTCTGCTTGGAGAGGCCATGTTCAGTTGCTGCAGAAGGATGTATGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCGACAGCCAATGTTTCGTCTGAAATGCATGTCCCTCCTGGTTCTATCCCTTGTCCCCTTTGTCGACATGGAATAATTTCTTTCGTCAAATTACCAAGTTTCCAAccgaaagaaaataaattacatgGATCACTCAGCATGTGTACACCATGCATACAGCATCCACGCGATGTAGATCAGCCATCTCTTTCTCATAATACACCAGAAATTCGAAAAAACCGGGTAGCTTCTGTTTCTTCCGAGATGTTGTGTCCTGTCACCTGTACACCTTTTCCATCCGTAGCAATTCCTCTATGTACTACATGCAATGATGGTCCCTGTCCACCATTTGAACCTCAGGAAGATGAAACACAAGAAGAATCGCCTCGTCACTCACAAGCTTCGACAACAGATCAAGATAAAATGGAAGGGCCAAAACTGGTGAAAACAACTTGTTCAAGTATGTTTTGGGGTAGAAGAAGTTGCAGCCGGGAGAATCAATGCAATTCAGAAATAAATGCATGA 1545 0.4207 MGNSFGCSASGERLVSAARDGDLIEAKMLLEFNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRHGHWEVVQTLMLYRCNVMKADYLSGRTALHFAAVSGHVRCIRLVVADFVASVPYETLHARVDADVGDGLNTKRKQEQSALCKFVNKTADAGITALHMAALNGYFDCVQLLLDLNAYVSAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLAKGATRMALNCNGWLPLDVARMWGRHWLEPLLSPSSDAVVSPFPTSNYLSLPLMSVLNIARECGLHSSTTSSNEIDFCAVCLERPCSVAAEGCMHELCVRCALYLCSTANVSSEMHVPPGSIPCPLCRHGIISFVKLPSFQPKENKLHGSLSMCTPCIQHPRDVDQPSLSHNTPEIRKNRVASVSSEMLCPVTCTPFPSVAIPLCTTCNDGPCPPFEPQEDETQEESPRHSQASTTDQDKMEGPKLVKTTCSSMFWGRRSCSRENQCNSEINA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03099 514 SMART ANK_2a 111 141 IPR002110 GO:0005515
Tsu06g03099 514 SMART ANK_2a 177 206 IPR002110 GO:0005515
Tsu06g03099 514 SMART ANK_2a 44 73 IPR002110 GO:0005515
Tsu06g03099 514 SMART ANK_2a 77 106 IPR002110 GO:0005515
Tsu06g03099 514 SMART ANK_2a 220 252 IPR002110 GO:0005515
Tsu06g03099 514 MobiDBLite consensus disorder prediction 457 487 - -
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Tsu06g03099 514 Gene3D - 6 141 IPR036770 -
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Tsu06g03099 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 514 - -
Tsu06g03099 514 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Tsu06g03099 514 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Tsu06g03099 514 MobiDBLite consensus disorder prediction 463 485 - -
Tsu06g03099 514 Gene3D - 154 270 IPR036770 -
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat region circular profile. 220 245 - -
Tsu06g03099 514 PANTHER HOMEOBOX PROTEIN WARIAI 1 514 - -
Tsu06g03099 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 389 IPR013083 -
Tsu06g03099 514 Pfam Ankyrin repeats (many copies) 171 198 IPR002110 GO:0005515
Tsu06g03099 514 Pfam Ankyrin repeats (many copies) 46 97 IPR002110 GO:0005515
Tsu06g03099 514 SUPERFAMILY RING/U-box 318 375 - -
Tsu06g03099 514 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Tsu06g03099 514 Pfam Ankyrin repeats (3 copies) 213 266 IPR002110 GO:0005515
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Tsu06g03099 514 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03099 Tsu-Chr6 40979825 40987099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03099 14 279 Miscellaneous Gene Families AT2G31820 28.044 2.60e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03099 K19044 - gmx:100812809 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03099 06 40979825 40987099 Tsu06g03099 06 40979825 40987099 ECH
Tsu06g03099 06 40979825 40987099 Tsu01g04457 01 52251173 52255298 PCT