Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04457 ATGGGTAATTCCTTTGGATGTTCCGCCTCCGGCGAGAGACTTGTATCGGCGGCAAGAGACGGTGACCTTGTGGAGGCTAAGATGCTTTTGAACTGTAACCCTTGTCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGTGCTGATGTTAATTCAAGAAATTACTCTGGCCAGACGGCCTTGATGCAAGCGTGTAGATATGGGCATTGGGAAGTTGCACAGACACTTCTACTCTTCAGATGCAATGTTATGAGAGCAGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCGATGAACGGGCATGTAAGATGTATTAGACTTGTTGTGGCCGACTTTGTTCCAAGTGCTCCTTATGATGCAATATGTGCTCACGCAGATGCCGCTGACAAGGGTGGTGGATCAAATGTGAAAGGCAAACATGAACAAAGTGCCCTGTCCAAGTTTGTAAATAAGACCGCTGATGGTGGCATCACTGCCCTTCATATGGCTTCATTAAATGGGTACTTTGATTGTGTGCAACTGCTACTTGATCTTAATGCAAATTTGTCTTCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCACTACGCTGCTTGTGGGGGAAATTTAAAATGCTGTCAGatCCTCCTTGCAAGGGGTGCAAGTCGGACGGCTTTGAATTGCAACGGATGGCTTCCTCTTGATATTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGGCACCCAGTTCTGATGCCGTAACACCTGCTTTCCCtcattcaaattatttgtcCTTGCCTCTCATGAGTGCTCTCAACATAGCCAGAGAGTTTGGATTGCAATCATCTACAACTTCCTCTGATGAGATCGACTTTTGTGCTGTATGCCTAGAGAGGCCATGTTCAGTGGCAGCAGAAGGATGTGGACATGAACTTTGTGTGAGATGTGCGCTCTATCTTTGCTCGACAAGTAGCGTTTCTTCTGAAATGCTTGGTCCTCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAGTTGCCAGGTTCGcaagcaaaagaaaataaattacatgTGTCCCTTGGTCTTTGTACTCCATGCATGCTACATCCACGCGATGTAGATCAGATGTCTCTTTCTCACACTCCAGAGATCCAAAGAAACTGTGTTGATTCCGTTCCTTCAGAGTTACTATGCCCTGTCACATGTAGTCCATTTCCATCTATGGCAATACCTCTATGCACCTGCAATGACGGTTCGTGTCCATCATTTGAACCACGATGTGTGGAAACACGAGATGAATCACCTCATCACTCACAAGCGTCAACAACAGATCAGGATAAAATTGAAGGCCCAAGACTGGATAAAACAACTTGCTCTAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGAACCAATGCAATTCAGAAATAAATGCTTAA 1542 0.4423 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVAQTLLLFRCNVMRADYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYDAICAHADAADKGGGSNVKGKHEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANLSSVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTALNCNGWLPLDIARMWGRHWLEPLLAPSSDAVTPAFPHSNYLSLPLMSALNIAREFGLQSSTTSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSSVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDVDQMSLSHTPEIQRNCVDSVPSELLCPVTCSPFPSMAIPLCTCNDGSCPSFEPRCVETRDESPHHSQASTTDQDKIEGPRLDKTTCSNMFWGRRSCSRENQCNSEINA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04457 513 MobiDBLite consensus disorder prediction 464 486 - -
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Tsu01g04457 513 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Tsu01g04457 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 388 IPR013083 -
Tsu01g04457 513 ProSiteProfiles Zinc finger RING-type profile. 320 370 IPR001841 -
Tsu01g04457 513 SUPERFAMILY RING/U-box 316 376 - -
Tsu01g04457 513 Pfam Ankyrin repeats (many copies) 221 262 IPR002110 GO:0005515
Tsu01g04457 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 513 - -
Tsu01g04457 513 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat region circular profile. 221 247 - -
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Tsu01g04457 513 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat region circular profile. 178 206 - -
Tsu01g04457 513 Gene3D - 150 271 IPR036770 -
Tsu01g04457 513 PANTHER HOMEOBOX PROTEIN WARIAI 1 513 - -
Tsu01g04457 513 Gene3D - 4 149 IPR036770 -
Tsu01g04457 513 Pfam Ankyrin repeat 179 209 IPR002110 GO:0005515
Tsu01g04457 513 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Tsu01g04457 513 SMART ANK_2a 111 142 IPR002110 GO:0005515
Tsu01g04457 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Tsu01g04457 513 SMART ANK_2a 178 207 IPR002110 GO:0005515
Tsu01g04457 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Tsu01g04457 513 SMART ANK_2a 221 250 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04457 Tsu-Chr1 52251173 52255298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04457 46 306 Miscellaneous Gene Families AT1G07710 25.182 1.63e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04457 K19044 - gmx:100785638 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04457 01 52251173 52255298 Tsu01g04457 01 52251173 52255298 ECH
Tsu06g03099 06 40979825 40987099 Tsu01g04457 01 52251173 52255298 PCT