Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02917 ATGGTAACACCATTGGTGATTAAAAGCTTTAATTCAGAAAGTGATTATTTGGAAGTGAAAAGCTTGAAggatgttaaatatgttttgtggAATGAAACAATGAAAATATGGAAGATTACACTTCCAGTGGCACTTTCTTTACTTTTTCAATATCTCAACAATTCTTCAACTTCAATCTATGCTGGTCATCTTGGAGACATTGAactctcttctttctctgtTTATCAAAGTGTCATCACTTCTATCTATTTCTCTATGCTGTTTGGTATGTCAAATGCACTAGCAACACTATGTGGCCAAGCTTATGGTGCAGGACAATTTCAAAATGCTGGTATTTATCTTCAAAGATCATGGATTATACTCATCACCACTTGCATACTCCTTTTACCTATTCATATATATGCAACTCCAATCTTAAAATTTCTTggccaagaaaaagaaatagctGATCTAACTGGCAAATTTTCTATTCTAATAATTCCATACATGTTTTCCTTTGCTATCAATTTACCCCTCAAGAAATTTCTTCAAGCACAAAGCAAAGTTAATGTTATCATGTACATATCAATGGTGGCATTGCTCATACAAAATGGTTTACTTTACATCTTCATCTATGTATTTCATTTGGGAATGACTGGTTTAGCCATGGCAAGTAATATCTCAGGATGGTTATATTCTGTTGCATTAGTAATTTATGCTATTGGTTGGTGCAAAGAAGGATGGAATGGATTATCTTTGAGGGCATTTAAGGAATTATGGGAATTTACTAAACTAAGTCTTGGTTCATCTGTAATGATATGTTTAGAACAATGGTATTCTGCTTGTGTTGTGCTTCTTGCTGGTCACCTTGATAATCCTGTCATTGCTCTTGGTTCCTATTCAATTTGCCTTAATATTCAGGGTTGGAACATCATGCTGCTCCTTGGAACAAGTACAGCACTATGTGTTCGTATCTCTAATACACTTGGAATGTCACATCCAAGAGCAGCCAAATACTCTTTCTTGGTGACAATATCTCAAACTCTTCTCCTTGGAATTATTTTCATGACTATTATTTTCTTGAGTAAACAATATTTTCCTATGATCTTTACCAAGAGTGAGGATATGATTCATGCTGCAAGTGAATTAGCATATCTTCTTGGTATAACCATGGTTCTCACTAGTGTTTCACAAACTATATCAGGTTTGGTAATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTTTTACATTGTTGGACTCCCTATTGGACTTTTCCTTGGTTTCAACCAGCATTTAGGAGTTAAGGGTCTCTGGGGAGGCACAATGTGTGGCAGTGTTCTTCAGATTTTAGTCCTTGTAGTCATTATTTATAAGACCAACTGGACCAAAGAGGTAGAACAAACAGCTGATCGCATGCGAATATGGAGCTCTAACAACCTTAAGAAGGATACGTTCACATCTTGTTTAGCTTCTCAAAATCCCCAACTCTTCTCTCAAAATCTTTCAGTTTGGCTTTTGCATTTTAGCTTTCTCGAAGTCTCTACTGTTTTTTGTATTGAAGTGATTTTGCTTCTTTGCTTcagAGATGGCTGGGAGTGA 1596 0.3434 MVTPLVIKSFNSESDYLEVKSLKDVKYVLWNETMKIWKITLPVALSLLFQYLNNSSTSIYAGHLGDIELSSFSVYQSVITSIYFSMLFGMSNALATLCGQAYGAGQFQNAGIYLQRSWIILITTCILLLPIHIYATPILKFLGQEKEIADLTGKFSILIIPYMFSFAINLPLKKFLQAQSKVNVIMYISMVALLIQNGLLYIFIYVFHLGMTGLAMASNISGWLYSVALVIYAIGWCKEGWNGLSLRAFKELWEFTKLSLGSSVMICLEQWYSACVVLLAGHLDNPVIALGSYSICLNIQGWNIMLLLGTSTALCVRISNTLGMSHPRAAKYSFLVTISQTLLLGIIFMTIIFLSKQYFPMIFTKSEDMIHAASELAYLLGITMVLTSVSQTISGLVIGCGWQVMVGYINLACFYIVGLPIGLFLGFNQHLGVKGLWGGTMCGSVLQILVLVVIIYKTNWTKEVEQTADRMRIWSSNNLKKDTFTSCLASQNPQLFSQNLSVWLLHFSFLEVSTVFCIEVILLLCFRDGWE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02917 531 Pfam MatE 42 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu06g02917 531 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu06g02917 531 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
Tsu06g02917 531 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 476 - -
Tsu06g02917 531 PANTHER PROTEIN DETOXIFICATION 1 476 - -
Tsu06g02917 531 TIGRFAM matE: MATE efflux family protein 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02917 Tsu-Chr6 38356825 38384998 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02917 K03327 - gmx:100789611 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02917 06 38356825 38384998 Tsu06g02917 06 38356825 38384998 ECH
Tsu06g02917 06 38356825 38384998 Tsu01g04388 01 51738009 51741560 PCT