Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04388 ATGGACACTCCTCTTCTCTACGGCGCGGCGGAGTCATCGTTATTGGAGGAACATGGCGGAGATTACGCGGACGTGAAAGGATTTCAACAAGCTAAGAAAGTTTTCGCGATTGAATCAGCTAGAATATGGAAAATTGCGTTGCCgattgttttcaacattttgtgTCAATATGGTGTTAATTCTATCACCAACATTTTCGTTGGTCATCTCGGTGTTATCGAACTCTCTGCTGTTTCTCTTATTAATTCTGTCATTGGCACTTTCGCTTTTGGTTTCATGCTAGGTATGGGGAGTGCAACTGAGACGCTCTGTGGTCAAGCTTTTGGAGCTGGACAGGTTCAGATGCTTGGTGTTTATATGCAACGGTCATGGATAATTTTATTTGTGACAAGTATTCTCCTATTGCCGATATACATTTTTGCCAGTCCAATTTTGAAACTTCTTGGCCAACAGAAAGATATGGCTGATCTTGCTGGAAGTTTCGCATTTTTAGTAATTCCTCAATTTCTCTCACTTGCCTTCAACTTTCCAACCCAAAAGTTCCTTCAGGCTCAAAGTAAGGTTAATGCCATTGCTTGGATTGGGTTCGTGGCTCTAATTTTGCATATTGGGTTGCTTTGGCTCTTGATTTATGTATTAGATTTAGGCTTAACTGGTGCAGCGATTGCATTCGATGTCACGAGTTGGGGAATTACGTTGGCTCAACTTGTTTATGTGGTGGGTTGGTGTAAGGATGGATGGAATGGATTGTCGTGGTTGGCTCTTAAGGATATATGGTCCTTTGTTAGGCTATCCATTGCGTCTGCTGTTATGCTTTGCCTTGAAGTTTGGTATATGATGAGCCTCATAGTTCTTGCTGGCCACCTTGATAATGCAATTATTGCAGTTGATTCCATCTCTATATGCATGAATTACAATGGATGGGAAAGCATGATCTTCATTGGAGTAAATGCAGCTATAAGTGTCAGAGTTTCCAACGAACTTGGACTTCGACATCCAAGAGCTGCCAAATACTCCGTCTATGTGACAGTCTTTCAATCTCTTTTCATCGGAATATTCTTCATGGTTGTTATTTTGCTAACTAAGGACTACTTTGCTGTCGTTTTTACCAATAGCAAGGATTTGCAAGCGGCGGTTGCAAACCTAGGAAACCTCCTTGCGGTGACAATGGTTTTAAACAGCGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGCGGGTGGCAGGCCTTGGTGGCTTACATCAACGTAGGTTGTTATTACTTGTTTGGGCTTCCACTAGGGTACCTTCTTGGTTACACTGCAAAATTGGGGGTTAAGGGACTTTGGGGAGGTATGATATGTGGAATTCTCCTCCAGACCTTGCTGCTCACTGTGATACTTTACAAAACCAATTGGAATAAAGAGGTGGATAATACAACTGCACGCGTGCAGCAATGGGGTGGACATGCCATAGAAGAAGCTGATAATAAGACATTGGCTTCTGCATAA 1491 0.4212 MDTPLLYGAAESSLLEEHGGDYADVKGFQQAKKVFAIESARIWKIALPIVFNILCQYGVNSITNIFVGHLGVIELSAVSLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVQMLGVYMQRSWIILFVTSILLLPIYIFASPILKLLGQQKDMADLAGSFAFLVIPQFLSLAFNFPTQKFLQAQSKVNAIAWIGFVALILHIGLLWLLIYVLDLGLTGAAIAFDVTSWGITLAQLVYVVGWCKDGWNGLSWLALKDIWSFVRLSIASAVMLCLEVWYMMSLIVLAGHLDNAIIAVDSISICMNYNGWESMIFIGVNAAISVRVSNELGLRHPRAAKYSVYVTVFQSLFIGIFFMVVILLTKDYFAVVFTNSKDLQAAVANLGNLLAVTMVLNSVQPVISGVAVGGGWQALVAYINVGCYYLFGLPLGYLLGYTAKLGVKGLWGGMICGILLQTLLLTVILYKTNWNKEVDNTTARVQQWGGHAIEEADNKTLASA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04388 496 PANTHER MULTIDRUG RESISTANCE PROTEIN 34 477 - -
Tsu01g04388 496 PANTHER PROTEIN DETOXIFICATION 34 477 - -
Tsu01g04388 496 TIGRFAM matE: MATE efflux family protein 48 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu01g04388 496 Pfam MatE 268 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu01g04388 496 Pfam MatE 48 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu01g04388 496 CDD MATE_eukaryotic 38 470 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04388 Tsu-Chr1 51738009 51741560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04388 K03327 - gmx:100780766 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04388 01 51738009 51741560 Tsu01g04388 01 51738009 51741560 ECH
Tsu06g02917 06 38356825 38384998 Tsu01g04388 01 51738009 51741560 PCT