Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02707 ATGGCAGATGGCTTCTGGAACCGCCAGCAGCAGAATCTTCTCCCTCATTCCGGCCTGCACAAACGACCTCGTTCCGACTACGAAATGCCAGCTTCTGGTCTGCCCACAGGCAGCGAGATGCATAATTATCTTGCTCGCGAAGAGGATCGTTCTGGTCATCCAATGGTAAAGGACACAAAAACAATTGGATCTGCTTATGATCGCTACCTTCAGAGTGGGCAACTTTCTTCATTCACTTCTGGGGAAGCCAGTACAATTGGTGGTCTTGGATTGCAAAGGGGTGTTGGTGGATTACCAAACCATTCACTAGGGGATCCTGCTGTCATGATGGGGCGTCATGGGGGTGGTGGTCCTGATCTGGCACCAAATGGACGAGGTATTAATTATGGTTTTCAGCCACCGATGGATCCAGTTTCCAGGCCTGGGCCTGAGCCAGCACTCCTACCTCCAGATGCTTCACCTACTTTATATATTGAAGGTCTACCTTCTGATTGTACAAGAAGGGAAGTGGCTCATATTTTCCGCCCTTTTGTGGGATATAGAGAAGTGAGACTTGTAAGCAAAGAGGCCAAACATCGTGGAGATCCTCTGATCCTTTGTTTTGTGGACTTTGCAAATCCGGCTTGTGCAGCAACTGCCTTGAGTGCCTTGCAAGGCTATAAAGTTGATGAAATCAATCCTGAGTCAAGTCATTTGCGGCTTCAGTTTTCTCGGTATCCAGGCCCAAGAAGTGGAGGTGGTCCAAGAAGTAGTGGACCTGGTCCTAGAGGGGGACCTGGATCTCGTGGTAAGAGGTGA 798 0.4937 MADGFWNRQQQNLLPHSGLHKRPRSDYEMPASGLPTGSEMHNYLAREEDRSGHPMVKDTKTIGSAYDRYLQSGQLSSFTSGEASTIGGLGLQRGVGGLPNHSLGDPAVMMGRHGGGGPDLAPNGRGINYGFQPPMDPVSRPGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYPGPRSGGGPRSSGPGPRGGPGSRGKR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02707 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 250 - -
Tsu06g02707 265 SUPERFAMILY RNA-binding domain, RBD 138 263 IPR035979 GO:0003676
Tsu06g02707 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 239 IPR000504 GO:0003723
Tsu06g02707 265 CDD RRM_RBPMS_like 154 235 - -
Tsu06g02707 265 PANTHER RNA-BINDING PROTEIN 2 7 250 - -
Tsu06g02707 265 MobiDBLite consensus disorder prediction 1 16 - -
Tsu06g02707 265 SMART rrm1_1 155 228 IPR000504 GO:0003723
Tsu06g02707 265 MobiDBLite consensus disorder prediction 234 265 - -
Tsu06g02707 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 223 IPR000504 GO:0003723
Tsu06g02707 265 Gene3D - 151 239 IPR012677 -
Tsu06g02707 265 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02707 Tsu-Chr6 34930834 34936801 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02707 - - cam:101512502 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02707 06 34930834 34936801 Tsu01g04322 01 51134971 51139658 PCT