Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02688 ATGTCTCAAGTTGTTGCCACAAGATCCATTCAAACCACACTTCCTAGTTCTGGATCTACACATGATAGAGCTCAGAAGTTGTTAAAGAATCCAAGTTTTGGTTCTAAAGTGTTCCAACAAAAAGGGAATAAGTGTTCTAAATTGGTGTTTAGAAATTGTTATGTTAGTGCTATAAAATCAGCTGCTGTTGAAGTTGTTCCTGTTTCACCTGAAGATGATATAAAGATTGAGGAGCAGTTGCAACGTATACGTGGGGTGCAGCCATATGGTGATACTTCAAATGGAATATGGTCGAAGCCAACGTTTAAGCGTAAGACGAAGATAGTATGTACTATTGGACCTTCTACCGATACTAAGGAAATGATTTGGAAGTTGGCTGAGGCTGGTATGAATGTTGCTCGCCTCAATATGTCTCATGGTGATCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAAGAATATAATGCACAATCTAAGGACAATGTTATTGCAATTATGCTCGACACTAAGGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACCGGGCAGGAATTCACTTTTACTATTCAGAGAGGTGTTGGAACTGCGGACTGTGTCAGTGTCAACTATGACGATTTTGTCAATGATGTAGCAGTCGGGGACATGATTCTTGTTGATGGTGGTATGATGTCTCTGGTTGTTAAGTCTAAGACAGAGAGTTCAGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTTAAGTCAAGGAGACATTTGAACGTTAGAGGAAAAAGTGCAACATTGCCTTCAATAACTGAGAAGGATTGGGATGATATCAAATTCGGGGTGGATAACAAAGTTGATTTCTATGCTGTTTCCTTTGTTAAGGATGCCGAAGTCGTACACGAGCTGAAGAATTATTTGAAGAGCTGTGGTGCTGATATACATGTCATTGTAAAAATTGAAAGCGCGGATTCTATACCAAATTTGAATTCAATTATCACTGCATCTGATGGGGCTATGGTTGCCAGAGGAGATCTTGGTGCTGAGCTCCCTATTGAAGAAGTTCCTCTTTTACAGGAAGAGATAATTAACTTGTGTCGTAGCATGGGAAAGGCTGTGATTGTCGCAACAAATATGCTGGAAAGCATGATTGTTCACCCAACTCCAACTAGAGCTGAAGTATCAGATATAGCTATTGCCGTTCGAGAAGGTTCTGATGGAATAATGCTTTCCGGAGAAACCGCTCATGGGAAGTTCCCACTAAAAGCAGTGAAAGTGATGCACACAGTAGCGTTGCGGACAGAAGCCACTATACAAGGTGGACAAATGCCACCTAATATTGGTCAAGTGTTCAAGAACCACATGAGTGAGATGTTTGCATACCATGCAACCATGATGTCCAACACCCTTGGAACCTCTACTGTTGTTTTCACTCGAACCGGTTTCATGGCTGTCCTATTGAGCCACTATCGTCCTTCTGGCACAATATTTGCTTTCACAGATGAGAAGAGGGTACAGCAAAGATTGGCTTTGTATCAAGGAGTTTGTCCTGTATACATGGAGTTCAGCGATGATTCCGAAGAAACTTTCAGAAGAGCCTTGGATTTCCTACAGAAGCAAGGTATGGTGAAGGTAGGAGAAGAAGTTGCACTTGTACAAAGTGGTAGACAACCCATTTGGAGGTTCCAATCAACTCATAATATCCAAGTCAGGAAagtttaa 1722 0.4123 MSQVVATRSIQTTLPSSGSTHDRAQKLLKNPSFGSKVFQQKGNKCSKLVFRNCYVSAIKSAAVEVVPVSPEDDIKIEEQLQRIRGVQPYGDTSNGIWSKPTFKRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPINLTTGQEFTFTIQRGVGTADCVSVNYDDFVNDVAVGDMILVDGGMMSLVVKSKTESSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSCGADIHVIVKIESADSIPNLNSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIQGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAVLLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPVYMEFSDDSEETFRRALDFLQKQGMVKVGEEVALVQSGRQPIWRFQSTHNIQVRKV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02688 573 TIGRFAM pyruv_kin: pyruvate kinase 104 572 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 SUPERFAMILY PK C-terminal domain-like 422 573 IPR036918 -
Tsu06g02688 573 Gene3D - 106 431 IPR040442 -
Tsu06g02688 573 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 96 438 IPR015813 GO:0003824
Tsu06g02688 573 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Tsu06g02688 573 PANTHER PLASTIDIAL PYRUVATE KINASE 2 38 573 - -
Tsu06g02688 573 Pfam Pyruvate kinase, barrel domain 104 439 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 Pfam Pyruvate kinase, alpha/beta domain 461 553 IPR015795 -
Tsu06g02688 573 PANTHER PYRUVATE KINASE 38 573 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 SUPERFAMILY PK beta-barrel domain-like 173 264 IPR011037 -
Tsu06g02688 573 MobiDBLite consensus disorder prediction 1 22 - -
Tsu06g02688 573 Gene3D - 446 573 IPR036918 -
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 412 428 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 393 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 162 178 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 286 300 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu06g02688 573 Gene3D - 174 267 IPR015806 GO:0004743|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02688 Tsu-Chr6 34673369 34680459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02688 K00873 - gmx:100818193 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02688 06 34673369 34680459 Tsu01g04347 01 51418349 51422272 PCT