Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04347 ATGTCTCAGGTTGCGGCCACTCGATCCATTCAAACCTCTTTCTTACGACCCACTTCAGGATCTACACAAGAAAGGTCACAAATCTTGTTAAAGCCTCCAACTTTTTCCCCTAAAGCTTTTCCATCACAGGGTAACAATCACCCTAACCTTTGCATCAGAAACTCTCCAATCAATGCAAGAAAATCTGCATCTGCTGAAGTTGTTCCTGTTTCACCTGAAGATGATTCAAAGATTGAGGAGGAGTTGTTGAAGTTACGTGGTTTACAGCAATTTGGTGATGCTTCTAGTGGAATATGGTCAAAACCAACTGTTAGAAGGAAGACAAAGATTGTTTGTACTATTGGTCCTTCTACTAATACAAAGGAAATGATTTGGAAATTGGCTGAGGCTGGAATGAATGTGGCTCGTTTGAATATGTCTCATGGAGATCATGCTTCTCATAAGAAAGTTATTGAATTGGTTAAAGAATATAATGCACAATCTAAGGACAATGTTATTTCAATTATGCTTGATACCAAGggTCCTGAGGTTAGGAGTGGGGATTTGCCACAGCCAATATTGTTAAAACCTGGCCAGGAATTCACTTTTACTATCAAAAGTGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGATGATTTTGTCAATGATGTTGAAGAAGGGGACATGCTTCTTGTTGATGGTGGTATGATGTCTTTCTTGGTTAAGTCCAAAACTGCGGATTCTGTGAAATGTGAAGTTATTGACGGAGGAGAGCTCGCATCAAGGAGACATTTGAATGTTAGAGGAAAGAGTGCAACATTGCCTTCAATCACTGAGAAGGATTGGGATGACATCAAATTTGGAGTGGATAATGAAGTTGATTTCTACGCCGTTTCTTTCGTTAAGGATGCACAAGTTGTTCACGAACTGAAGAATTATTTGAAAAGCTGTGGTGCTGATATTCATGTAATTGTAAAAATTGAAAGCGCAGACTCTATACCGAACTTGCATTCAATTATTACCGCATCTGATGGGGCTATGGTTGCACGAGGAGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCTCTTTTGCAGGAAGAGATAATTAGGATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAACATGCTTGAAAGCATGATTGTTCACCCGACACCAACCAGAGCTGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGGAATAATGCTTTCTGGAGAAACTGCTCATGGAAAGTTTCCAATAAAAGCTGCGAAAGTAATGCACACGGTAGCATTACGGACAGAAGCCGCTTTACCAAGTGGGCAGATGCCTGCACCTAATATTGGCCAAGTATTCAAGAACCACATGAGTGAGATGTTTGCATACCATGCAACCATGATGTCTAATACCCTTGGAACATCAACTGTTGTCTTCACTAGATCGGGCTTCATGGCTATTCTATTGAGCCATTATCGACCCTCAGGCACCATATTTGCATTTACTGATCAGAAAAGGGTACAACAAAGGTTAGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCTGATGACTCGGAAGAGACATTCACAAAAGCATTGGATTTGTTGCAGAAAAATGGAATGGttaaagaaggagaagaagtagCCCTTGTACAAAGTGGAAGGCAACCTATATGGAGGTTCCACTCCACTCACAATATCCAGGTCCGAACAGTAGCTGCCACAAATTAA 1743 0.4045 MSQVAATRSIQTSFLRPTSGSTQERSQILLKPPTFSPKAFPSQGNNHPNLCIRNSPINARKSASAEVVPVSPEDDSKIEEELLKLRGLQQFGDASSGIWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHKKVIELVKEYNAQSKDNVISIMLDTKGPEVRSGDLPQPILLKPGQEFTFTIKSGVGTADCVSVNYDDFVNDVEEGDMLLVDGGMMSFLVKSKTADSVKCEVIDGGELASRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPIKAAKVMHTVALRTEAALPSGQMPAPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDQKRVQQRLALYQGVCPIYMEFSDDSEETFTKALDLLQKNGMVKEGEEVALVQSGRQPIWRFHSTHNIQVRTVAATN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04347 580 PANTHER PLASTIDIAL PYRUVATE KINASE 2 52 576 - -
Tsu01g04347 580 MobiDBLite consensus disorder prediction 1 25 - -
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 Pfam Pyruvate kinase, barrel domain 106 442 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 TIGRFAM pyruv_kin: pyruvate kinase 106 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 Pfam Pyruvate kinase, alpha/beta domain 464 556 IPR015795 -
Tsu01g04347 580 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Tsu01g04347 580 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 98 440 IPR015813 GO:0003824
Tsu01g04347 580 Gene3D - 449 577 IPR036918 -
Tsu01g04347 580 Gene3D - 176 269 IPR015806 GO:0004743|GO:0006096
Tsu01g04347 580 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
Tsu01g04347 580 SUPERFAMILY PK C-terminal domain-like 425 576 IPR036918 -
Tsu01g04347 580 PANTHER PYRUVATE KINASE 52 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04347 580 Gene3D - 108 433 IPR040442 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04347 Tsu-Chr1 51418349 51422272 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04347 K00873 - gmx:100818193 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04347 01 51418349 51422272 Tsu01g04347 01 51418349 51422272 ECH
Tsu06g02688 06 34673369 34680459 Tsu01g04347 01 51418349 51422272 PCT