Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01380 ATGCAAGACTTCCTCAAGGGAAAGACTATTCTGGTCACAGGTGCAACTGGCTTCTTAGCAAAAGTATTTGTTGAAAAGATACTAAGGATCCAACCGGAGATACAAAAAATGTATCTACTTCTAAGAGCTTCAAACACTGAATTGGCTGAACAACGTTTACAAAATGAGGTTTTTAAGATAGATTTATTTCGCGTACTAAGAGAAAGGTTGGGTGAAAATTTCAATTCTTTCATATCAAAGAAGGTTGTGACAATAGCAGGTGATGTTGCTAAAGAAAATTTGGGAATAAAAGATGAAAAGCTTAAAAATGAGATATTTGAAGAGATAGACTTTCTTGTCCATGCTGCTGCATGTACCAAGTTTAATGAAagATTTGACATATTGATGGATGTTAACACCAAAGGTGCTTTACGTGTCTTGAACATTGCAAAGAATTGTAAAAGAATAAAGGCTTTTGTGCACATATCGACCGCATATGTATGCGGATATGCTAAGGATGGACATTCaattttaagagaaaaatcCCTGAAAGAGGGCTCAAAATTAGACATACACAAAGAAATTGATTTATTGGAGAGAAAATTAGTTGAACTCCAAGCAATGAATGTGGATGAAGATACAACGAAATTTGCATTGAAAGATTATGGAATGGATAGagCAAATTTTCACGGTTGGCCAAATACATATACATTCACAAAAGCAATGGGAGAGATGCTTTTAGCGCAACATAAAGATAACATACCTTTGATCACTATACGTCCCACTGTAGTAACTAGTACAATAAAAGATCCTTTCCCCGGTTGGATCGAAGGTTTAAGAACTATTGACAGTGTCATATATAGCTATGGTATAGGGAAAATGAAGTTTTTCATCGGTGATCCCAACACAATTATAGATGCGATACCTGCAGACATGGTAATCAATTGTGTGATTAGAGCCATTTTTGTTCATTCAAATAAACCTCCTGAGAATTTCATCTACCATGTTTCTTCTTCATTAAGAAATCCTCTCAAATATTCTGATTTATGTAATATGACCcatcattatttcaaaaaaaaccCTATCATAAATCAAAATGGAACGCCAATAATCACTTCCAAGGCACTTGTGTTGATGAATGGTTTTGCTGCTTTCAACATTTATATTACAATCCGATATTTGCTACTACAGGTCTTATATTTGGTAAACAAAATTTGTCGAGGGAGCTTCCAAGATGTTTATGACAAGCAAAGCAGAAAATTTAGAGTGCAGCAGCAATTGGCAAAATTATACAAACCATATGCGTGTTTTAAATCAGCCTTTGATGATACCAACGTTGAAATTTTGCGGATGGCAACAAAGGATCTTAATACAGAGAATGATGAACTGAACTTTGACCCTACTAGCATTGACTGGACAGACTATATGATGAATACACACATCCCTGGCCTCCTTAAGTATAATaagaaataa 1452 0.3409 MQDFLKGKTILVTGATGFLAKVFVEKILRIQPEIQKMYLLLRASNTELAEQRLQNEVFKIDLFRVLRERLGENFNSFISKKVVTIAGDVAKENLGIKDEKLKNEIFEEIDFLVHAAACTKFNERFDILMDVNTKGALRVLNIAKNCKRIKAFVHISTAYVCGYAKDGHSILREKSLKEGSKLDIHKEIDLLERKLVELQAMNVDEDTTKFALKDYGMDRANFHGWPNTYTFTKAMGEMLLAQHKDNIPLITIRPTVVTSTIKDPFPGWIEGLRTIDSVIYSYGIGKMKFFIGDPNTIIDAIPADMVINCVIRAIFVHSNKPPENFIYHVSSSLRNPLKYSDLCNMTHHYFKKNPIINQNGTPIITSKALVLMNGFAAFNIYITIRYLLLQVLYLVNKICRGSFQDVYDKQSRKFRVQQQLAKLYKPYACFKSAFDDTNVEILRMATKDLNTENDELNFDPTSIDWTDYMMNTHIPGLLKYNKK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01380 483 Pfam Male sterility protein 12 309 IPR013120 -
Tsu06g01380 483 PANTHER FATTY ACYL-COA REDUCTASE 3 480 - -
Tsu06g01380 483 Pfam Male sterility protein 386 480 IPR033640 -
Tsu06g01380 483 CDD FAR-N_SDR_e 8 354 - -
Tsu06g01380 483 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 328 IPR036291 -
Tsu06g01380 483 Gene3D - 2 368 - -
Tsu06g01380 483 Coils Coil 181 201 - -
Tsu06g01380 483 CDD FAR_C 409 480 IPR033640 -
Tsu06g01380 483 PANTHER MALE STERILITY PROTEIN 2-RELATED 3 480 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01380 Tsu-Chr6 13022028 13029739 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01380 4 434 Acyl Lipid Metabolism Gene Families AT3G44560 48.741 3.01e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01380 K13356 - gmx:100793736 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04700 02 56120945 56129504 Tsu06g01380 06 13022028 13029739 PCT