Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01345 ATGGCTGAAGTACTACATTCTTGTGATCCAATTCACATTCACACAACCGACCAAGAACAACAATCAccatcttctttttcttctttagcCGTAGCAGTGAACAGTAGTTTTTCTATGGTAACTGATTGTGAAGCAGAGGAGATGAATGTTAGAGAGAATGAAAAAACAGCACAAGAGCTATCCCTTTTGGCCATTCTTGTGACCCTTTTCAGGAAAACTTTTATTTCTTGCTCTACTGATGTTGACATGGAAGTTGGTCATCCTACTAACGTGCGCCATGTTGCGCATGTTACTTTTGATAGGTTTAATGGTTTCTTGGGTTTGCCTCTTGAGTTTTTACCTCAAGTACCTACTACACCTCCTAGTGCCAGTGCAACTGTTTTTGGAGTTTCGACAGAATCAATGAAATTATCATACGACACAAGAGGGAACATTGTGCCAACAATTCTACTACTAATGCAAGAACACTTGTATGCTCAAGGAGGATTACAGGCAGAGGGAATTTTCAGAATTAATGCAGACAATAGGCAAGAGGAATATGTTAGGGATCAATTAAATAAGGGAGTTGTCCCACAAAACATTGATGTACATTGTTTAGCAGGTTTGATTAAGGCTTGGTTTAGGGAGCTGCCAAGAGGTGTTCTGGATTCTTTATCTCCAGACCAGATAATGCAATGTCAAACAGAAGAGGATTGTGCCGAACTGATGAATCAGCTACCTCATACCGAAGCTTCCCTTTTGGATTGGATAATCAATCTTATGGCTGATGTTGTACAAGAGGAACATCTGAATAAAATGAATGCACGCAACATCGCCATGGTTTTTGCACCAAACATGACTCAGATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATAAATTTCTTGAAGACACTTGTATCAAGGACACTAAGGGCAAGGAAGATGTTGTTGCAAGATGATAATAGTCTTTCGAAGTCGTGTCAGCAAGATGTTGTTGCAACAGAAAATGAAGTGCTAATCaatgaagcaatttga 1026 0.386 MAEVLHSCDPIHIHTTDQEQQSPSSFSSLAVAVNSSFSMVTDCEAEEMNVRENEKTAQELSLLAILVTLFRKTFISCSTDVDMEVGHPTNVRHVAHVTFDRFNGFLGLPLEFLPQVPTTPPSASATVFGVSTESMKLSYDTRGNIVPTILLLMQEHLYAQGGLQAEGIFRINADNRQEEYVRDQLNKGVVPQNIDVHCLAGLIKAWFRELPRGVLDSLSPDQIMQCQTEEDCAELMNQLPHTEASLLDWIINLMADVVQEEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVINFLKTLVSRTLRARKMLLQDDNSLSKSCQQDVVATENEVLINEAI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01345 341 CDD RhoGAP 147 304 - -
Tsu06g01345 341 Pfam RhoGAP domain 147 281 IPR000198 GO:0007165
Tsu06g01345 341 Gene3D Rho GTPase activation protein 118 315 IPR008936 GO:0007165
Tsu06g01345 341 ProSiteProfiles CRIB domain profile. 85 98 IPR000095 -
Tsu06g01345 341 Pfam P21-Rho-binding domain 84 109 IPR000095 -
Tsu06g01345 341 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 311 - -
Tsu06g01345 341 CDD CRIB 83 126 - -
Tsu06g01345 341 Gene3D CRIB domain 80 116 IPR036936 -
Tsu06g01345 341 ProSiteProfiles Rho GTPase-activating proteins domain profile. 130 314 IPR000198 GO:0007165
Tsu06g01345 341 SUPERFAMILY GTPase activation domain, GAP 125 304 IPR008936 GO:0007165
Tsu06g01345 341 SMART PBD_5 85 119 IPR000095 -
Tsu06g01345 341 PANTHER MKIAA1688 PROTEIN 1 311 IPR044785 GO:0005096
Tsu06g01345 341 SMART RhoGAP_3 144 307 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01345 Tsu-Chr6 12645044 12647837 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01345 - K20642 mtr:MTR_4g052850 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04720 02 56351771 56355171 Tsu06g01345 06 12645044 12647837 PCT