Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04720 ATGACACAAGTTCTCCACTCTCCACCTCATTTTACTTCATCACCTTcaacttcttcctcttcttcttcttctcctctttcTTCATTCTCTTGTCATGCCATTTTTCAACCTCCTTCACAGCCTCATTTTCCACTTTTTGAACTTTTAGTTACCCTTTTTAGAAAATCattatttcctttcaaaaataGTGGTAACAAGGAAATTTGTAATATGGACATTAGCCCTCCGACTAACGTGCGTCATGTTGCGCACGTTACTTTTGATAGGTTCAATGGTTTTTTGGGTTTGCCTGATGAGTTTGAACCCGATTTTCCACGAAGGCCTCCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTATTGTTAATGCAAAGGCATCTTTATGTTCAAGGAGGCTTGCAGGTGGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGGATCAATTGAACTTAGGATTGGTTCCTGAAGACATTGATGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAACTTCCGACCGCCGTTCTGGATTCATTATCACAAGAGCAGGTAATGGAATGCCAAACTGAGGAAGACAGTATTGTACTAGTGAGGCATCTACCTCATACTGAAGCCGCACTCTTGGACTGGGCCATCAATCTAATGGCCGATGTAGTCCAATACGAACATCTTAATAAGATGAACGCACGCAACATTGCCATGGTTTTCGCACCAAACATGACTCGGATGGCCGATCCATTAACTGCATTGATGTACGCAGTTCAAGTGATGAACTTTTTGAAGACACTTATATTAAGGACGCTACGAGAAAGAAAGGATTCAGTGGTTGAATCGAATCCTAGATTGAACTTAGAACCTTCTGATGAGAATGGACACCGTAAACTTTTTGAGTCGTGTCAGAAAGAAGATACTGCAGCAGCAGCAGAATATGAAGAGGCTCAGGAAAATTTTGTTTCTGAAAAATCCGTCTTAGAATGTTCACCTGAATTGCTCGAAAAAAATTCCTCCACTAGAGAAGAATCTGGCAGTTTGATCAGCACTTCTGAGAATCAAATTTCCAATGAGGATTTGTATTGTGAGTTTCCACCGAAAAGAAACATGGGGAAGAACAACAAGCCTAGTCAATCAAGTAGTTCAAATGCTAGAAAAGGGTCTAAAAAGACAAGAAGCCAACAACCTGCGATCAATGGAAAAGCATCAGTCGAGAAAAGGGGAATGAGGACTTTGAGTAACACAGATACAAGATCCGACCGAGTCGAAGCTTGGCGGTGA 1353 0.3962 MTQVLHSPPHFTSSPSTSSSSSSSPLSSFSCHAIFQPPSQPHFPLFELLVTLFRKSLFPFKNSGNKEICNMDISPPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQGGLQVEGIFRINADNSQEEHVRDQLNLGLVPEDIDVHCLAGLIKAWFRELPTAVLDSLSQEQVMECQTEEDSIVLVRHLPHTEAALLDWAINLMADVVQYEHLNKMNARNIAMVFAPNMTRMADPLTALMYAVQVMNFLKTLILRTLRERKDSVVESNPRLNLEPSDENGHRKLFESCQKEDTAAAAEYEEAQENFVSEKSVLECSPELLEKNSSTREESGSLISTSENQISNEDLYCEFPPKRNMGKNNKPSQSSSSNARKGSKKTRSQQPAINGKASVEKRGMRTLSNTDTRSDRVEAWR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04720 450 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 450 - -
Tsu02g04720 450 ProSiteProfiles CRIB domain profile. 73 86 IPR000095 -
Tsu02g04720 450 MobiDBLite consensus disorder prediction 395 424 - -
Tsu02g04720 450 PANTHER MKIAA1688 PROTEIN 1 450 IPR044785 GO:0005096
Tsu02g04720 450 CDD CRIB 71 111 - -
Tsu02g04720 450 MobiDBLite consensus disorder prediction 435 450 - -
Tsu02g04720 450 SMART PBD_5 73 107 IPR000095 -
Tsu02g04720 450 Pfam P21-Rho-binding domain 72 105 IPR000095 -
Tsu02g04720 450 Gene3D CRIB domain 69 102 IPR036936 -
Tsu02g04720 450 SMART RhoGAP_3 132 295 IPR000198 GO:0007165
Tsu02g04720 450 Gene3D Rho GTPase activation protein 103 308 IPR008936 GO:0007165
Tsu02g04720 450 ProSiteProfiles Rho GTPase-activating proteins domain profile. 118 303 IPR000198 GO:0007165
Tsu02g04720 450 MobiDBLite consensus disorder prediction 386 450 - -
Tsu02g04720 450 SUPERFAMILY GTPase activation domain, GAP 113 292 IPR008936 GO:0007165
Tsu02g04720 450 CDD RhoGAP 135 291 - -
Tsu02g04720 450 Pfam RhoGAP domain 135 269 IPR000198 GO:0007165
Tsu02g04720 450 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04720 Tsu-Chr2 56351771 56355171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04720 - K20642 ccaj:109798318 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04720 02 56351771 56355171 Tsu02g04720 02 56351771 56355171 ECH
Tsu02g04720 02 56351771 56355171 Tsu06g01345 06 12645044 12647837 PCT