Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01260 ATGGATTGCGGTATCTATGGCATCGTAACTAAACTCCGCACGTTGTTATTGTTTATCTACATCTtcatgtttgtaattttttctaCTTCACACTCtctttcatcatcttcaacagtTCAAATCAACTCAAATTCAATCTTAGTAGCTTTACTTGATTCACATTACACAGAATTAGCAGAACTTGTTGAAAAAGCTATGTTATTACAAACACTTGAAGAAACTGTTGGTAAAAACAACATCACAATTTTCGCACCAAAAAATGAAGCTCTAGAAAGAGATCTTGATCCTAATTTCAAAACATTTCTTCTTGAACCACGGAATCTTAAATCTCTTCAGACACTGTTAATGTCACATATAATTCCAAGTCGAATCAATGGATCCGGGTCGGGGTCCGGGTCGGTGTTCGGGTTGACCCGATATAAGACACTTTCTAAGGTTCATCAAATTGCTATTCAATCAAATGAAACTTCTCGGCAATGGACAGTTAACGGTGCTAAGATTCTTCATCTTAACGCCGTTACTCGACCTGACGGTGTTATTCACGGAATTGAACGGCTTCTTATTCCACGTTCTGTTCAAGATGACTTTAACCGTCGTCGGAGTCTTGTATCGATTGCTGCTATTAAGCCGGAAGGAGCACCGGAGGTTGATCCGAGAACTCATCGGTTGAAGAAACCTGCTCCGCCGCAGAATCCAGGTTCACCGCCGGTACTCCCAATTTACGATGCACTGGCTCCAGGACCTTCGCTAGCACCGGCGCCAGCACCAGGACCTGGTGGACCCCGCCACCATTTCAACGGCGAGGCGCAGGTGAAAGATTTCATACAGACGTTGATTCATTACGGTGGTTACAACGAGATGGCGGACATTCTTGTTAACCTAACGTCGTTAGCGACGGAAATGAGTAGGTTAGTTTCAGAGGGTTATGTTTTAACTGTTCTAGCTCCAAATGACGAAGCTATGGCTAAGTTAACGACGGATCAGTTAAGTGAACCGGGTTCACCTGAACAAATTATGTATTATCATTTGATTCCTGAGTATCAAACCGAAGAGAGTATGTATAATGCTGTTAGAAGATTCGGAAAAGTTCGTTATGATACACTTCGATTGCCTCATAAGGTTGATGCTCAAGAAGCTGATGGGTCGGTTAAATTCGGGCATGGTGATGGGTCGGCTTATTTGTTCGACCCGGATATTTATACTGATGGAAGGATTTCTGTACAAGGAATTGATGGAGTTTTGTTTCCACATCAAGAAGAGGAAACTGTTGTTGATAAGGATGTGACCCGAACTCAAACGGGTCAACCCGCTAAAGTTGTGGCTAAGCAAAGAAGAGGTAAACTACTGGAAACAGCTTGCTGGATGCTTGGAAACTTTGGACAGCATTCTAGATTCACCTCTTGTCAATAA 1410 0.4163 MDCGIYGIVTKLRTLLLFIYIFMFVIFSTSHSLSSSSTVQINSNSILVALLDSHYTELAELVEKAMLLQTLEETVGKNNITIFAPKNEALERDLDPNFKTFLLEPRNLKSLQTLLMSHIIPSRINGSGSGSGSVFGLTRYKTLSKVHQIAIQSNETSRQWTVNGAKILHLNAVTRPDGVIHGIERLLIPRSVQDDFNRRRSLVSIAAIKPEGAPEVDPRTHRLKKPAPPQNPGSPPVLPIYDALAPGPSLAPAPAPGPGGPRHHFNGEAQVKDFIQTLIHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVDAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPHQEEETVVDKDVTRTQTGQPAKVVAKQRRGKLLETACWMLGNFGQHSRFTSCQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01260 469 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 469 IPR044654 -
Tsu06g01260 469 SUPERFAMILY FAS1 domain 52 189 IPR036378 -
Tsu06g01260 469 MobiDBLite consensus disorder prediction 211 243 - -
Tsu06g01260 469 SMART fasc_3 81 190 IPR000782 -
Tsu06g01260 469 SMART fasc_3 312 417 IPR000782 -
Tsu06g01260 469 Gene3D FAS1 domain 46 190 IPR036378 -
Tsu06g01260 469 ProSiteProfiles FAS1/BIgH3 domain profile. 42 187 IPR000782 -
Tsu06g01260 469 MobiDBLite consensus disorder prediction 228 242 - -
Tsu06g01260 469 SUPERFAMILY FAS1 domain 250 416 IPR036378 -
Tsu06g01260 469 Pfam Fasciclin domain 294 416 IPR000782 -
Tsu06g01260 469 Pfam Fasciclin domain 54 189 IPR000782 -
Tsu06g01260 469 Gene3D FAS1 domain 265 417 IPR036378 -
Tsu06g01260 469 ProSiteProfiles FAS1/BIgH3 domain profile. 271 414 IPR000782 -
Tsu06g01260 469 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01260 Tsu-Chr6 11839929 11844254 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01260 - - gmx:100790599 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04786 02 57023288 57026538 Tsu06g01260 06 11839929 11844254 PCT