Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01222 ATGTATATAACAACAACCTCTTCTCTTCTCAGAACAACTACAACCAAACCTAACAAACTCTTCTTTTCTTCTCCCATTTCTAGAACCTTCTTACATCCTCCATCTTCTCTAACTCCCCGCACTTCGAGATCATTCGTTTCTTCCCTTACCCGCTTCAACCACCGCCGCCTCCATTCTTCCCCTCCTCTCACTCTCCGTCATCAGGTCAGAGCCGTCGCTCCCGTCATCGAAAGCTTCCACCGCAAAATCGCTACCATGGCTAGCGAAAATCCTTTCAAGGGAAACTTGACTAGTCTTCCTAAGCCAGGTGGTGGAGAGTTTGGAAAATTCTACAGTCTTCCTTCTTTCAATGATTCAAGAATTGACAAGTTACCATACTCCATTAGAATTCTTCTTGAATCTGCCATTCGCAATTGCGATAATTTCCAAGTCACTAAAGAAGATGTTGAGAAGATTATTGACTGGGAAAACACTTCTACTAAACAAGTTGAGATTCCTTTCAAGCCTGCCCGTGTTCTCTTGCAGGATTTTACTGGAGTCCCAGCTGTTGTCGACTTGGCTTGCATGCGAGATGCTATGAATAAGCTTGGTAgtgattcaaataaaatcaatcctCTGGTTCCTGTTGATCTCGTTGTTGACCATTCAGTTCAAGTTGATGTGGCAAGGTCAGAAAATGCAGTGCAGGCTAATATGGAACTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCATTCCGTAACATGCTCGTTATTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGGGTAGTTTTCAACAACGAGGGCTTACTCTATCCTGATAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGTGTCGGAGGTATTGAAGCTGAGGCAGCAATGCTCGGTCAGCCTATGAGCATGGTTTTGCCTGGAGTTGTTGGGTTCAAGCTATCTGGAAATCTGCGCAATGGTGTTACAGCGACTGACTTGGTTCTGACTGTGACACAGATTCTTAGAAAGCATGGTGTTGTAGGGAAATTTGTTGAATTTTATGGTGATGGTATGAGTAAATTATCTTTAGCTGACAGAGCTACTATTGCTAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACATTACAATATCTCAAGCTAACTGGGAGAAGTGATGAGACTGTGGCGATGATAGAGTCTTATCTCAGGGCAAACAGACTGTTTGTTGACTATAATGAGCAGCCGCAACAAGATAGGGCATATTCATCATATCTGGAATTAAACCTGTCCGACGTAGAACCATGTATCTCAGGACCAAAGAGACCCCATGACCGGGTAcctttgaaagaaatgaaggcCGACTGGCACGCTTGTCTCGATAGCAAAGTTGGATTTAAGGGATTTGCTATACCAAAAGAGGCACAGGGAAAAGTTGCGAAATTTGATTTTCATGGGCAGCCAGCAGAGCTCAAGCATGGCAGTGTAGTGATTGCAGCAATCACGAGTTGTACGAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTTGCGAAAAAGGCCCATGAGCTTGGTTTGCAGGTCAAGCCTTGGGTGAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACTAAATATCTACTCCAGAGTGGACTGCAAAAGTATTTAAATGAACAAGGTTTTCATATCGTTGGATTTGGCTGTACAACATGTATTGGCAATTCAGGGGATCTGCATGAATCTGTTGCTTCCGCCATCTCAGAAAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGGGTTCATCCCTTGACAAGAGCCAACTATCTTGCCTCACCTCCTCTTGTTGTTGCTTATGCTCTTGCTGGCACGGTTGATATTGACTTTGAGAAGGAGCCAATTGGAACGGGGAAGGATGGCAAGAATGTCTACCTGAGGGATATCTGGCCATCTACCGAAGAAATCGCAGAGACTGTTCAATCTAGTGTGTTACCTGACATGTTCCGAAGTACATACGAATCTATCACAAAGGGAAACCCTATGTGGAACCAACTGCAAGTTCCAGCTGACACTCTCTACTCTTGGGACCCCAACTCAACATATATTCATGAACCTCCATACTTCAAGAACATGACCATGGACCCTCCTGGATCTCATGGTGTGAAAGATGCCTATTGCCTGCTAAATTTTGGTGACAGTATAACCACCGATCATATTTCTCCAGCTGGAAGCATTAACAAGGACAGTCCTGCTGCTAAATACCTCCTGGAGCGCGGGGTTGAACGCAAGGACTTCAATTCTTATGGAAGTCGTCGTGGCAATGATGAGGTGATGGCGAGGGGAACTTTTGCCAACATTCGCCTTGTTAACAAGCTCTTAAACGGGGAAGTTGGTCCTAGGACAGTTCACATTCCAACTGGGGAGAAGCTTTATGTGTTTGATGCAGCAATGAGATACAAGACTTCTGGGCAAGACACCATTGTACTAGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCGGCCAAGGGTCCAATGTTATTGGGGGTCAAAGCTGTGATAGCTAAAAGTTTCGAGAGAATTCATCGTAGTAACTTGGTAGGAATGGGTATTATCCCTCTTTGCTATAAACCTGGGGAGGATGCAGACTCATTGGGACTGACTGGTCATGAACGCTACACAATTGATCTTCCAAGTAAAATCAGTGACATCAAGCCTGGCCAAGATGTCAGAGTCACAACTGATAGCGGAAAATCTTTCACCTGCGTAGCACGCTTTGACACCGAGGTGGAACTAGCATACTTCAACCACGGAGGAATTCTTCCGTATGTCATACGTAATCTCATTAAGCATTGA 2955 0.4423 MYITTTSSLLRTTTTKPNKLFFSSPISRTFLHPPSSLTPRTSRSFVSSLTRFNHRRLHSSPPLTLRHQVRAVAPVIESFHRKIATMASENPFKGNLTSLPKPGGGEFGKFYSLPSFNDSRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVIPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGNLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMSKLSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANRLFVDYNEQPQQDRAYSSYLELNLSDVEPCISGPKRPHDRVPLKEMKADWHACLDSKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGDLHESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVYLRDIWPSTEEIAETVQSSVLPDMFRSTYESITKGNPMWNQLQVPADTLYSWDPNSTYIHEPPYFKNMTMDPPGSHGVKDAYCLLNFGDSITTDHISPAGSINKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPRTVHIPTGEKLYVFDAAMRYKTSGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCYKPGEDADSLGLTGHERYTIDLPSKISDIKPGQDVRVTTDSGKSFTCVARFDTEVELAYFNHGGILPYVIRNLIKH 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01222 984 ProSitePatterns Aconitase family signature 2. 585 598 IPR018136 -
Tsu06g01222 984 SUPERFAMILY LeuD/IlvD-like 723 982 - -
Tsu06g01222 984 SUPERFAMILY Aconitase iron-sulfur domain 104 719 IPR036008 -
Tsu06g01222 984 CDD AcnA_IRP 171 656 - -
Tsu06g01222 984 PRINTS Aconitase family signature 232 245 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 285 298 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 375 388 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 299 314 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 458 472 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 585 598 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 361 374 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 523 534 IPR001030 -
Tsu06g01222 984 PRINTS Aconitase family signature 256 264 IPR001030 -
Tsu06g01222 984 PANTHER ACONITATE HYDRATASE 56 982 - -
Tsu06g01222 984 Pfam Aconitase C-terminal domain 783 910 IPR000573 -
Tsu06g01222 984 Pfam Aconitase family (aconitate hydratase) 150 654 IPR001030 -
Tsu06g01222 984 Gene3D - 683 744 - -
Tsu06g01222 984 TIGRFAM aconitase_1: aconitate hydratase 1 108 982 IPR006249 -
Tsu06g01222 984 Gene3D Aconitase, domain 4 747 983 IPR015928 -
Tsu06g01222 984 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 56 982 IPR006249 -
Tsu06g01222 984 ProSitePatterns Aconitase family signature 1. 519 535 IPR018136 -
Tsu06g01222 984 Gene3D Aconitase, domain 3 459 682 IPR015931 -
Tsu06g01222 984 Gene3D Aconitase, domain 3 89 458 IPR015931 -
Tsu06g01222 984 CDD AcnA_IRP_Swivel 760 930 IPR044137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01222 Tsu-Chr6 11382391 11390591 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01222 K01681 - gmx:100793264 1771.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01222 06 11382391 11390591 Tsu06g01222 06 11382391 11390591 ECH
Tsu06g01222 06 11382391 11390591 Tsu02g04813 02 57328127 57336320 PCT