Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04813 ATGGCTTCTCTCAGAGCAACAAGGTCCAAACTATTCCCTCTTTCTAGAACCTTCTCTTCACCTCTCGCTCGTTCTTCTCCCGTTCGATCTCCAGCTTTTTCCTCATCCGCCGCCGCTAACGCCGCACGTTCCACCGTTAATCGTTGGAGCCATGGCGTCCTTTGGAGATCTCCTTTCACTCTCCGTCCTCAGATCAGAGCTATTGCTCCTTTCATCGAACAATTTCACCGCAAGATCGCCACTAACGCTGGTGAAAATCCTTTCAAAGGAAACTTGACGAGTCTCCCCAAGCCTGGCGGCGGTGAATTTGGAAAGTTCTATAGCCTTCCTTCTCTCAAAGACCCGAGAATTGATAGGTTACCTTACTCTATCAGAATTCTCCTCGAATCTGCTATTCGTAATTGTGACAACTTCCAAGTTACTAAAGAAGATGTTGAAAAGATTATTGACTGGGAAAACACTGCTTCAAAGCAAGTTGAGATCCCTTTCAAGCCTGCTCGTGTTCTCCTCCAGGATTTTACTGGAGTCCCAGCTGTTGTTGATCTGGCTTGCATGCGTGATGCTATGAATAGGCTTGGCAGTGATTCTAATAAAATCAATCCTTTGGTTCCTGTTGATCTTGTCGTTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTTCAGGCTAATATGGAGCTTGAGTTCCAGAGAAACAAGGAgagattttcttttcttaaatgGGGATCAACTGCTTTCCGTAATATGCTCGTTGTTCCTCCTGGTTCTGGTATAGTACACCAGGTCAATCTTGAATATCTTGGACGAGTTGTTTTCAACAATGAGGGGTTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATTGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGGTCAGCCTATGAGTATGGTATTACCTGGTGTTGTTGGGTTCAAGTTGTCTGGGAAATTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTCACACAAATTCTTAGGAAACATGGTGTTGTAGGGAAATTCGTTGAATTTTATGGCAATGGTATGGGTGAATTATCATTAGCTGACAGGGCTACTATTGCCAATATGTCTCCTGAATATGGAGCAACCATGGGTTTCTTCCCCGTAGATCATGTAACATTACAATACCTCAAACTAACCGGAAGAAGTGACGAGACTGTGGCAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTGTCGACTATAATGAGCCTCCACAAGACAGAGCTTATTCATCCTATCTTGAATTGAATCTCGACGAAGTCGAACCATGTATCTCTGGACCAAAGAGACCTCATGATCGTGTGcctttgaaagaaatgaaggcTGATTGGCGTGCTTGTCTTGATAATAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGAAGCACAAGGCAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCTGAGCTAAAACATGGCAGTGTTGTGATTGCTGCAATCACAAGTTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTTGCAAAGAAGGCTCATGACTTAGGGTTGAAGGTTAAGCCTTGGGTAAAAACAAGTCTTGCTCCTGGTTCAGGAGTTGTTACCAAATACCTAATTCAGAGTGGCCTACAAAAGTATCTAAATGAACAGGGTTTCAATATTGTTGGATTTGGTTGTACCACATGTATCGGCAATTCAGGGGATCTAGACGAATCAGTTTCTGCTGCCATATCAGAAAATGACATAGTAGCGTCTGCTGTGCTGTCAGGGAACCGTAATTTTGAGGGCCGAGTGCATCCCTTGACACGCGCTAACTATCTCGCCTCTCCTCCTCTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTGACATTGACTTTGAAAAGGAGCCATTGGGGACAGGAAAGGATGGCAAGAATGTCTTCTTGAGGGATATTTGGCCATCCACAGAAGAAATTGCACAGACTGTCCAATCCAGTGTGTTACCTGACATGTTCCGAAAAACATATGAATCTATTACCAAGGGTAATCCTATGTGGAACGAACTACAAGTTCCTGCTGAGAAGCTGTACTCATGGGACCCTAACTCAACATATATTCACGAGCCTCCATACTTCAAGGACATGACCATGGATCCTCCTGGACCTCATGGTGTGAAAGATGCCTATTGCCTGTTGAACTTTGGTGACAGCATAACAACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCTGCTGCAAAATACCTTGTCCAGCGTGGGGTTGAAAGGAAAGACTTCAACTCTTATGGAAGCCGTCGTGGCAACGATGAAGTTATGTCTAGGGGAACATTTGCCAACATACGTATTGTAAACAAGCTCTTGAATGGGGAAGTGGGCCCAAAAACAGTCCACGTTCCAACAGGGGAGaagctttttgtttttgatgCAGCAGAGAGATACAAGGCTGCAGGGCATGACACCATTGTGCTGGCTGGAGCTGAATACGGCAGTGGAAGTTCCAGGGATTGGGCCGCCAAGGGTCCCATGTTATTGGGAGTCAAAGCTGTGATATCCAAGAGTTTTGAGAGAATTCATCGCAGTAATTTGGTAGGAATGGGTATTATTCCCCTTTGCTTCAAATCTGGCGAGGATGCTGACACTTTGGGATTGACTGGTCACGAACGTTTTACCATCGACCTTCCAAATAAAATCAGCGAGATAAAGCCTGGCCAAGACGTCACTGTCACAACCGATAACGGAAAATCTTTCACCTGCACAGCACGCTTTGATACTGAGGTGGAACTGGAGTACTTTAACCATGGAGGCATCCTTCCCTATGTCATCAGGAACCTCATTAAGCAGTAA 2940 0.4415 MASLRATRSKLFPLSRTFSSPLARSSPVRSPAFSSSAAANAARSTVNRWSHGVLWRSPFTLRPQIRAIAPFIEQFHRKIATNAGENPFKGNLTSLPKPGGGEFGKFYSLPSLKDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTASKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNRLGSDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFSFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGNGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFVDYNEPPQDRAYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWRACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHDLGLKVKPWVKTSLAPGSGVVTKYLIQSGLQKYLNEQGFNIVGFGCTTCIGNSGDLDESVSAAISENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPLGTGKDGKNVFLRDIWPSTEEIAQTVQSSVLPDMFRKTYESITKGNPMWNELQVPAEKLYSWDPNSTYIHEPPYFKDMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLVQRGVERKDFNSYGSRRGNDEVMSRGTFANIRIVNKLLNGEVGPKTVHVPTGEKLFVFDAAERYKAAGHDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERFTIDLPNKISEIKPGQDVTVTTDNGKSFTCTARFDTEVELEYFNHGGILPYVIRNLIKQ 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04813 979 ProSitePatterns Aconitase family signature 2. 580 593 IPR018136 -
Tsu02g04813 979 TIGRFAM aconitase_1: aconitate hydratase 1 104 977 IPR006249 -
Tsu02g04813 979 SUPERFAMILY LeuD/IlvD-like 718 977 - -
Tsu02g04813 979 Gene3D Aconitase, domain 4 742 978 IPR015928 -
Tsu02g04813 979 PANTHER ACONITATE HYDRATASE 53 979 - -
Tsu02g04813 979 Pfam Aconitase C-terminal domain 778 905 IPR000573 -
Tsu02g04813 979 ProSitePatterns Aconitase family signature 1. 514 530 IPR018136 -
Tsu02g04813 979 Gene3D Aconitase, domain 3 454 677 IPR015931 -
Tsu02g04813 979 Coils Coil 977 979 - -
Tsu02g04813 979 PRINTS Aconitase family signature 228 241 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 252 260 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 281 294 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 295 310 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 357 370 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 371 384 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 453 467 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 518 529 IPR001030 -
Tsu02g04813 979 PRINTS Aconitase family signature 580 593 IPR001030 -
Tsu02g04813 979 CDD AcnA_IRP 167 651 - -
Tsu02g04813 979 Gene3D - 678 739 - -
Tsu02g04813 979 CDD AcnA_IRP_Swivel 755 925 IPR044137 -
Tsu02g04813 979 Gene3D Aconitase, domain 3 85 453 IPR015931 -
Tsu02g04813 979 Pfam Aconitase family (aconitate hydratase) 146 649 IPR001030 -
Tsu02g04813 979 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 53 979 IPR006249 -
Tsu02g04813 979 SUPERFAMILY Aconitase iron-sulfur domain 100 714 IPR036008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04813 Tsu-Chr2 57328127 57336320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04813 K01681 - gmx:100810088 1758.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04813 02 57328127 57336320 Tsu02g04813 02 57328127 57336320 ECH
Tsu06g01222 06 11382391 11390591 Tsu02g04813 02 57328127 57336320 PCT