Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01188 ATGTCTTCCAAAATGTGTgggttttttgtttgtcttatgTTGGTGTTTTGTGTATCTTTGTCTTCCTCTTCTAAGTTTGATGAACTCTTTCAACCAAGTTGGGCTTTTGATCATTTTGTCCATGAAGGAAACCTCCTTAAACTCAAACTTGATAACTCTTCTGGTGCTGGTTTTGGATCCAAAAGCAAGTATATGTTTGGGAAAGTATCTATCCAACTTAAGCTTGTTGAAGGTGACTCTGCTGGAACTGTAACTGCTTTCTATATGTCATCGGACGGTCCAAAACACAACgagtttgattttgaatttttaggcAATAGCACTGGGGAACCTTATTCTGTTCAAACAAATGTGTATGTGAATGGTGTTGGTAACCGTGAGCAGAGACTCGACCTTTGGTTTGATCCAACTAAAGATTTTCACTCTTACTCTATTTTCTGGAATCAACGTCAAGTTGTATTTCTAGTAGATGAAACACCAATAAGAGTACACACAAACATGGAACACAAAGGAATCCCTTATCCAAAGGATCAACCAATGGGAGTATACAGTTCAATATGGAATGCAGATAATTGGGCAACACAAGGAGGAAGAGTTAAAACAGATTGGTCTCATGCACCTTTCATTGCAACTTATAAATCATTTGAAATCAATGCTTGTGAATGTCCTGTTTCAATTGCTGCAATGGATAATACAAAAAGGTGTAGTAGTAGTGAAGATAAAAAATATTGGTGGGATGAGCCTAATTTGTCTGTACTTAATTTGCATCAAAGTCATCAACTTATGTGGGTTAGGAATCATCATATGGTTTATGATTATTGTAATGATGGTGCTAGATTTCCGGTTACGCCGGTAGAGTGTGTTCATCATCGTCATAGCTAG 882 0.356 MSSKMCGFFVCLMLVFCVSLSSSSKFDELFQPSWAFDHFVHEGNLLKLKLDNSSGAGFGSKSKYMFGKVSIQLKLVEGDSAGTVTAFYMSSDGPKHNEFDFEFLGNSTGEPYSVQTNVYVNGVGNREQRLDLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPYPKDQPMGVYSSIWNADNWATQGGRVKTDWSHAPFIATYKSFEINACECPVSIAAMDNTKRCSSSEDKKYWWDEPNLSVLNLHQSHQLMWVRNHHMVYDYCNDGARFPVTPVECVHHRHS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01188 293 PRINTS Glycosyl hydrolase family 16 signature 56 74 IPR008264 GO:0004553|GO:0005975
Tsu06g01188 293 PRINTS Glycosyl hydrolase family 16 signature 114 127 IPR008264 GO:0004553|GO:0005975
Tsu06g01188 293 PRINTS Glycosyl hydrolase family 16 signature 132 149 IPR008264 GO:0004553|GO:0005975
Tsu06g01188 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 291 - -
Tsu06g01188 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 291 IPR013320 -
Tsu06g01188 293 CDD GH16_XET 22 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu06g01188 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu06g01188 293 Gene3D - 13 293 - -
Tsu06g01188 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tsu06g01188 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 212 IPR000757 GO:0004553|GO:0005975
Tsu06g01188 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 291 IPR044791 GO:0004553
Tsu06g01188 293 Pfam Glycosyl hydrolases family 16 29 204 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01188 Tsu-Chr6 10977590 10980807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01188 56 292 Glycoside Hydrolase AT4G03210 73.418 1.27e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01188 K08235 - gmx:100785982 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01188 06 10977590 10980807 Tsu02g04860 02 57772553 57774925 PCT