LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g04860	atgaCTAGGATGTCTTGTCTCTTGGGATTTtctgtgtgttttttgtttgttgggtTAGTTTCTTGTTCTAAATTTGAGGAACTCTTTCAACCTGGTTGGGCTATGGACCATTTTGAACATCAAGGAGATTTACTCAAACTCAAACTTGACAATTATTctgGTGCTGGATTTGGATCTAAGAGTAAGTATATGTTTGGGAAAGTGACTGTGCATCTTAAGCTTGTGGAGGGTGATTCTGCTGGAACAGTTACTGCTTTCTAtatGTCATCAGAAGGCCCAAATCataatgaatttgattttgagtttttgggCAATACCACTGGTGAACCATACTCAGTTCAAACCAATGTGTATGTTAATGGTGTTGGTAATAGAGAGCAAAGACTTAACCTATGGTTTGATCCATCTAAGGATTTTCATACCTACTCAATTTTTTGGAACCAACGTCAAGTAGTGTTTCTAGTGGATGAGACACCAATAAGGGTACACACAAATTTGGAACACAAAGGAATtccatttccaaaagatcaaGCAATGGGGGTATACAGTTCAATATGGAATGCTGATGATTGGGCCACACAAGGTGGACGTGTGAAAACAGATTGGAGTCATGCACCTTTTGTTGCTACCTACAAAGATTTTGAGATTAATGCTTGTGAATGTTCTGTGCCAGTGACATCAAATGATAATGCTAAGAAATGTAGTAGTAGTGAAGATAAAAAATATTGGTGGGATGAACCTATGTTGTCTGAACTCACTATTCATCAAAGTCATCAACTTATTTGGGTTAGGGCTAATCATATGGTTTATGATTATTGCGCCGATACTGCTAGGTTCCCCGTCATACCTGCCGAATGTGTTCGTCACCATCACTAG	876	0.3562	MTRMSCLLGFSVCFLFVGLVSCSKFEELFQPGWAMDHFEHQGDLLKLKLDNYSGAGFGSKSKYMFGKVTVHLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPSKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFEINACECSVPVTSNDNAKKCSSSEDKKYWWDEPMLSELTIHQSHQLIWVRANHMVYDYCADTARFPVIPAECVRHHH	291

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g04860	291	Pfam	Glycosyl hydrolases family 16	29	203	IPR000757	GO:0004553\|GO:0005975
	Tsu02g04860	291	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	5	288	IPR044791	GO:0004553
	Tsu02g04860	291	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	5	288	-	-
	Tsu02g04860	291	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	23	211	IPR000757	GO:0004553\|GO:0005975
	Tsu02g04860	291	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	239	286	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Tsu02g04860	291	Gene3D	-	17	291	-	-
	Tsu02g04860	291	PIRSF	EndGlu_transf	1	291	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Tsu02g04860	291	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	22	-	-
	Tsu02g04860	291	SUPERFAMILY	Concanavalin A-like lectins/glucanases	29	289	IPR013320	-
	Tsu02g04860	291	CDD	GH16_XET	23	286	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Tsu02g04860	291	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Tsu02g04860	291	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Tsu02g04860	291	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g04860	Tsu-Chr2	57772553	57774925	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g04860	55	291	Glycoside Hydrolase	AT4G03210	75.949	1.14e-139	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g04860	K08235		-	gmx:100527891	547.354

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g04860	02	57772553	57774925	Tsu02g04860	02	57772553	57774925	ECH
	Tsu06g01188	06	10977590	10980807	Tsu02g04860	02	57772553	57774925	PCT