Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00398 ATGACAGACACAAAACTCAAAACCGTCGTCACGTGGCGCAACATTCCCAACCTCAACTCCACCTCCCACGACGTCGTTTCATCCAACCGCCTCTTCAACGACGCCGTTTTCACTTTCACCGACGCAAACACCATTCGAACCAAATTCGCCACCATCTCCACATCGCAAACCAAACCGAACAACGAATTCACTCCGACGCCAGCTCAGCTTCTTAATCACCCGCTCGCTGTTGTCGCTCTTGTTCCCAAAGATGCTGCATTGTTTCTCGCCGGAGCTGTTGCCGGTGCTGCTGCTAAAACCGTTACTGCTCCACTCGATCGAATCAAGCTTCTCATGCAGACTCATGGATTGCGAATTGGACAAGAAAGTGCTAAGAAGACAATTGGTTTTATCGAGGCAATAACTATGATAGGGAAGGAAGAAGGTATTAGAGGTTACTGGAAGGGTAACCTACCGCAGGTTATTAGGGTTATACCTTATAGTGCCGTCCAGCTCTTTGCTTATGAACTTTATAAGAAAGTATTCAAGGGAAAAGACAATGAGCTATCTGTTGTGGGAAGACTTGCAGCAGGTGCTTTTGCAGGCATGACATCAACTTTTATAACGTACCCTTTAGATGTACTGAGATTACGATTAGCTGTTGAACCTGGGTGCCGAACAATGACAGAGGTCGCCTTGAGCATGGTAAAAGAGGAAGGTTTTGCATCTTTCTACTATGGCCTTGGACCTTCTCTTATTGGAATAGCTCCATATATTGCAGTTAACTTTTGTGTTTTTGACTTACTAAAGAAGTCGTTGCCAGAGAAATATCAGAAGAGGACTGAAACATCTCTAGTCACTGCCGTGCTTTCAGCATCTCTTGCCACACTTACATGCTATCCTCTGGATACAGTACGAAGACAGATGCAACTGAAGGGTACCCCTTATAAGACAGTATTAGACGCGATTTCAGGTATTGTGGCACAGGATGGAGTTATTGGCTTGTACCGGGGATTTGTGCCCAATGCTTTAAAAAACCTACCAAACAGCAGCATCAGGCTTACTACATATGACATTGTCAAACGCCTTATTGCAGCTAGTGAGAAAGAGTTTCAAACAATTGCCGAGGAAAACCGCAACAAACTAAAGAAACACCCGTAA 1140 0.4491 MTDTKLKTVVTWRNIPNLNSTSHDVVSSNRLFNDAVFTFTDANTIRTKFATISTSQTKPNNEFTPTPAQLLNHPLAVVALVPKDAALFLAGAVAGAAAKTVTAPLDRIKLLMQTHGLRIGQESAKKTIGFIEAITMIGKEEGIRGYWKGNLPQVIRVIPYSAVQLFAYELYKKVFKGKDNELSVVGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGCRTMTEVALSMVKEEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVAQDGVIGLYRGFVPNALKNLPNSSIRLTTYDIVKRLIAASEKEFQTIAEENRNKLKKHP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00398 379 Gene3D Mitochondrial carrier domain 84 357 IPR023395 -
Tsu06g00398 379 PRINTS Mitochondrial carrier protein signature 87 100 IPR002067 GO:0055085
Tsu06g00398 379 PRINTS Mitochondrial carrier protein signature 100 114 IPR002067 GO:0055085
Tsu06g00398 379 PRINTS Mitochondrial carrier protein signature 149 169 IPR002067 GO:0055085
Tsu06g00398 379 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Tsu06g00398 379 PRINTS Mitochondrial carrier protein signature 238 256 IPR002067 GO:0055085
Tsu06g00398 379 PRINTS Mitochondrial carrier protein signature 281 303 IPR002067 GO:0055085
Tsu06g00398 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 182 265 IPR018108 -
Tsu06g00398 379 PANTHER SOLUTE CARRIER FAMILY 25 7 369 - -
Tsu06g00398 379 Pfam Mitochondrial carrier protein 181 268 IPR018108 -
Tsu06g00398 379 Pfam Mitochondrial carrier protein 276 358 IPR018108 -
Tsu06g00398 379 Pfam Mitochondrial carrier protein 87 177 IPR018108 -
Tsu06g00398 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 272 356 IPR018108 -
Tsu06g00398 379 SUPERFAMILY Mitochondrial carrier 85 352 IPR023395 -
Tsu06g00398 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 82 174 IPR018108 -
Tsu06g00398 379 PANTHER ADP/ATP CARRIER PROTEIN 7 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00398 Tsu-Chr6 3398104 3402137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00398 7 374 Organic Solute Cotransporters AT3G51870 68.966 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00398 K14684 - gmx:100796878 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01365 04 13869707 13874718 Tsu06g00398 06 3398104 3402137 PCT